swbarnes2's user avatar
swbarnes2's user avatar
swbarnes2's user avatar
swbarnes2
  • Member for 6 years, 2 months
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0 votes

Alignment with arbitrary number of mismatches or gaps

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How to detect mismatch before mapping in RNA-Seq data

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Relationship between sequencing lane and ngs dataset

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cellranger mkfastq with full path to --id flag

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K means clustering, would PCA be a better option?

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STAR quantMode vs RSEM vs Kallisto

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Questions regarding the detection of variants (SNPs and Indels) in mammal

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Is BWT based aligner suitable for any types of alignment task?

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Make a fasta out of mapped reads without taking into account the reference

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Differentially expressed genes analysis in Seurat

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why in 3' quantseq should we use reference genome and not transcriptome?

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Filtering out reads from a reference (e.g. rRNA) using bowtie2

0 votes
Accepted

Identifying nested/overlapping reading frames in nucleotide sequences

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Trying to create a .bam file without the need for a .sam file

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about two group comparison of three group data in DESeq2 package

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RNASeq: Normalization, stabilization, gene length and rlog

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VlnPlot problem

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Normalize RNA seq data from multiple runs for expression analysis

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How to input the opposite strand of DNA?

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Un-normalize DESeq2 counts

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Accepted

Understanding the different designs in DESeq2

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Accepted

Why does my volcano plot show genes at the extremities of the graph?

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BAM files with no RNAME and POS, how to map contents to SNPs?

-1 votes

I have two fasta files READ1 and READ 2. How to identify which one is the reverse and the forward?

-1 votes

problem with feature counts of RNA bulk seq paired data- in Rsubread

-1 votes

How can I take cell number into account to find total RNA expression?

-1 votes

Why does samtools mpileup sometimes include ref bases (other than ',' or '.')?

-1 votes

Chromosome information for miRNA

-2 votes

How to retrieve the DNA sequence from a particular species and region through command line?

-5 votes

Is the genome a programming language (i.e. LISP)? Can we analyze it with computer science theory?

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