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James Hawley's user avatar
James Hawley's user avatar
James Hawley's user avatar
James Hawley
  • Member for 7 years, 1 month
  • Last seen more than a month ago
16 votes
Accepted

Ultimate reproducibility in R?

9 votes
Accepted

Can't install newest Blast from Conda

5 votes
Accepted

'Wildcards' object has no attribute 'sample'

5 votes
Accepted

How many types of DNA methylation are there?

5 votes

How to differentiate DNA fastq and RNA fastq files?

4 votes

How to identify which isoforms of a gene are actually expressed in my data?

4 votes

Doubt about using TPM for statistics

3 votes
Accepted

ATAC peak anatations

3 votes

Using `install.packages` with conda-managed R

3 votes

How to subset a BAM by a list of QNAMEs?

2 votes

Biological replicates on Chip-seq Transcription factor data

2 votes
Accepted

Get a single number representing the contact probability between a pair of genomic loci using HiC data

2 votes
Accepted

How to split FASTQ reads without re-running `fastq-dump`?

2 votes

Install DESeq2 through anaconda

2 votes

Score predefined ChIP-seq peaks with MACS2 or equivalent

2 votes
Accepted

Different results of spearman correlation between TPM and FPKM

2 votes

Why are TPMs per 10k or 100k in many scRNA-seq studies?

2 votes

How does picard's MarkDuplicate handle unmapped reads?

2 votes
Accepted

Advantages of paired-end sequencing compared to single end

2 votes

Methylation data: beta values are normally distributed

2 votes
Accepted

snakemake restricting resources for specific rule

2 votes

beginner RNA-seq Replicate papers

1 vote

I am trying to find correlation between two ChIP-seq datasets but the Pearson and Spearman test results do not correspond with the peak overlap

1 vote

Is loss/gain of function reflected in RNA-seq transcript counts?

1 vote

How to visualize genome track of gene in specific cell-lines?

1 vote

Recommended coverage depth for ChIP Seq (H3K9me3 )

1 vote

Question: Bismark methylation for non-uniquely mapping BS-seq reads

1 vote

How to subset genes and its nested features from a GFF file using a gene list

1 vote
Accepted

Clarification about how mapping to a reference genome works in RNA seq

1 vote
Accepted

How to get the intersection of peaks after peak calling using MACS2?