User Angus Campbell

3 votes

2 answers

1k views

Plotting a gene in Seurat

asked Feb 17, 2022 at 19:58

2 votes

2 answers

570 views

How will Seurat handle pre-normalized and pre-scaled data?

asked Apr 2, 2022 at 18:29

2 votes

1 answer

27 views

Best way to match genes in two RNA-seq count matrices from two geo accessions

asked Feb 10, 2022 at 19:26

2 votes

0 answers

43 views

Does the contrast matrix I have made address the question I am trying to answer?

asked Jan 25, 2023 at 8:37

2 votes

1 answer

64 views

At what point is a gene different between species that we call it a different gene?

asked Nov 24, 2021 at 18:44

1 vote

1 answer

237 views

Toptable error, wont recognize condition

asked Mar 29, 2021 at 5:07

1 vote

1 answer

39 views

Transfer learning for a Convolutional NN for Recursion dataset

asked Oct 7, 2021 at 4:34

1 vote

0 answers

66 views

Gene Ontology Specific Fold Changes

asked Nov 8, 2019 at 18:35

1 vote

1 answer

52 views

Brackets in .Rmd code blocks

asked Mar 4, 2021 at 21:06

1 vote

1 answer

171 views

Calling GEOquerry error while loading the library

asked Mar 5, 2021 at 23:25

1 vote

1 answer

402 views

Gene symbol list for all protein coding genes in mice

asked Mar 9, 2023 at 0:57

1 vote

1 answer

37 views

PCR primers for detecting hetero vs homozygous and WT mice in our colony

asked Dec 14, 2023 at 20:24

1 vote

1 answer

130 views

Normalization methods for single cell RNA sequencing that take read count into account

asked Feb 12, 2022 at 2:54

1 vote

2 answers

163 views

Normalization methods to combine scRNA-seq experiments with different sequencing depths

asked Apr 11, 2022 at 3:41

1 vote

1 answer

220 views

Aligning scRNA-seq fastq to .bam without cell barcodes

asked Jul 15, 2022 at 8:04

1 vote

1 answer

49 views

(scRNA-seq) I have a dataset with 4 conditions (experiments) should I be anchoring aka integrating data for each comparison when looking for DEGs?

asked Jan 28, 2022 at 18:49

0 votes

1 answer

20 views

Understanding regularization step in Meta-cell pre processing

asked Nov 20, 2022 at 20:02

0 votes

1 answer

108 views

Common gene naming conventions and how to convert between them

asked Mar 18, 2021 at 22:09

0 votes

1 answer

820 views

Interpreting a kernel density function plot of gene expression

asked Nov 23, 2019 at 21:30

0 votes

1 answer

46 views

Integrating scRNA-seq data using raw data

asked Jan 27, 2022 at 5:53

Stack Exchange Network

20 Questions

Plotting a gene in Seurat

How will Seurat handle pre-normalized and pre-scaled data?

Best way to match genes in two RNA-seq count matrices from two geo accessions

Does the contrast matrix I have made address the question I am trying to answer?

At what point is a gene different between species that we call it a different gene?

Toptable error, wont recognize condition

Transfer learning for a Convolutional NN for Recursion dataset

Gene Ontology Specific Fold Changes

Brackets in .Rmd code blocks

Calling GEOquerry error while loading the library

Gene symbol list for all protein coding genes in mice

PCR primers for detecting hetero vs homozygous and WT mice in our colony

Normalization methods for single cell RNA sequencing that take read count into account

Normalization methods to combine scRNA-seq experiments with different sequencing depths

Aligning scRNA-seq fastq to .bam without cell barcodes

(scRNA-seq) I have a dataset with 4 conditions (experiments) should I be anchoring aka integrating data for each comparison when looking for DEGs?

Understanding regularization step in Meta-cell pre processing

Common gene naming conventions and how to convert between them

Interpreting a kernel density function plot of gene expression

Integrating scRNA-seq data using raw data