Bioinformatics
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mattm
  • Member for 6 years, 6 months
  • Last seen more than a week ago
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8
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60
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3
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7
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70
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10
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1
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Top posts
All Questions Answers
Score Newest
question
14
Are soft-clipped bases used for variant calling in samtools + bcftools?
May 19, 2017
question
10
What are the de facto required fields in a SAM/BAM read group?
Jun 9, 2017
question
9
What are all the reference files produced by bwa index, and are these dependent upon whether the reference is zipped?
Jun 2, 2017
question
6
How should the SAM MD tag match the CIGAR string?
Jun 13, 2017
question
6
How do I rewrite a read group using pysam?
Oct 9, 2018
question
5
Is the optional SAM NM field strictly computable from the MD and CIGAR?
Jun 13, 2017
question
4
Filter bam using SNP list in bed format with minimum mapping quality and base quality
Feb 15, 2018
question
4
What is a samtools mpileup reference skip?
Nov 8, 2019
answer
3
Is there a way to retrieve several SAM fields faster than `samtools view | cut -f`?
Aug 25, 2017
answer
3
Frequency of specific viral sequence in .BAM or .fastq
May 2, 2019
Top network posts
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84
Does Airplane Mode allow GPS location to pass through?
64
Economic viability of surviving the death of a sole provider leaving a $500k inheritance?
53
Fee-only financial advice vs. asset management (which includes advice)?
52
Should homeowners insurance cover the cost of the home?
46
Is there any advantage to combining spices before applying them to meat?

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