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Geraldine_VdAuwera
  • Member for 6 years, 1 month
  • Last seen more than 2 years ago
1 vote

Accessing .bam/.cram files from AWS S3?

1 vote

Parsing .vcf file for this information

2 votes

Help with the definitions of fields in a VCF output by Strelka

0 votes
Accepted

Picard validation error regarding bin field of BAM file

1 vote

Is there a read mapper that allows input in SAM format instead of FASTA/FASTQ?

0 votes

How can I count the number of reads that support a variant in a bam file?

0 votes

Meaning of the FORMAT fields of the VCF file coming from GIAB project

5 votes

How do I generate a variant list (i.e. VCF file) using Illumina reads from a human genome?

3 votes

How to subset a VCF by chromosome and keep the header?

2 votes

Extract reads from bam files by their @RG

3 votes

Books on bioinformatics algorithms

4 votes

Concerning the current outbreak, using bioinformatics

1 vote

GATK 4.1.4.0 Mutect stats output

0 votes

Get start and end coordinates per chromosome

2 votes
Accepted

What samples can be used for a Mutect2 Panel of Normals

2 votes

Marking optical or PCR duplicates with picard vs. samtools flagstat

3 votes

GATK CombineVariants complains the contig order in the VCF files