User Geraldine_VdAuwera - Bioinformatics Stack Exchange

Geraldine_VdAuwera

Member for 5 years, 7 months
Last seen more than 1 year ago

17 Answers

Score Activity Newest

5 votes

How do I generate a variant list (i.e. VCF file) using Illumina reads from a human genome?

answered Apr 23, 2020 at 17:17

4 votes

Concerning the current outbreak, using bioinformatics

answered Apr 8, 2020 at 14:54

3 votes

Books on bioinformatics algorithms

answered Apr 22, 2020 at 20:10

3 votes

How to subset a VCF by chromosome and keep the header?

answered Apr 23, 2020 at 15:56

3 votes

GATK CombineVariants complains the contig order in the VCF files

answered May 6, 2018 at 22:12

2 votes

Marking optical or PCR duplicates with picard vs. samtools flagstat

answered Apr 7, 2020 at 2:26

2 votes

Accepted

What samples can be used for a Mutect2 Panel of Normals

answered Apr 7, 2020 at 2:39

2 votes

Extract reads from bam files by their @RG

answered Apr 23, 2020 at 15:34

2 votes

Help with the definitions of fields in a VCF output by Strelka

answered Apr 23, 2020 at 20:00

1 vote

Parsing .vcf file for this information

answered Apr 23, 2020 at 20:19

1 vote

Accessing .bam/.cram files from AWS S3?

answered Apr 24, 2020 at 18:20

1 vote

Is there a read mapper that allows input in SAM format instead of FASTA/FASTQ?

answered Apr 23, 2020 at 18:59

1 vote

GATK 4.1.4.0 Mutect stats output

answered Apr 7, 2020 at 3:12

0 votes

Get start and end coordinates per chromosome

answered Apr 7, 2020 at 2:47

0 votes

Accepted

Picard validation error regarding bin field of BAM file

answered Apr 23, 2020 at 19:37

0 votes

Meaning of the FORMAT fields of the VCF file coming from GIAB project

answered Apr 23, 2020 at 17:49

0 votes

How can I count the number of reads that support a variant in a bam file?

answered Apr 23, 2020 at 17:54