As of May 31, 2023, we have updated our Code of Conduct.
Geraldine_VdAuwera's user avatar
Geraldine_VdAuwera's user avatar
Geraldine_VdAuwera's user avatar
Geraldine_VdAuwera
  • Member for 5 years
  • Last seen more than 1 year ago
5 votes

How do I generate a variant list (i.e. VCF file) using Illumina reads from a human genome?

4 votes

Concerning the current outbreak, using bioinformatics

3 votes

Books on bioinformatics algorithms

3 votes

GATK CombineVariants complains the contig order in the VCF files

2 votes

Marking optical or PCR duplicates with picard vs. samtools flagstat

2 votes

Extract reads from bam files by their @RG

2 votes

Help with the definitions of fields in a VCF output by Strelka

1 vote

Parsing .vcf file for this information

1 vote

Accessing .bam/.cram files from AWS S3?

1 vote

GATK 4.1.4.0 Mutect stats output

1 vote

How to subset a VCF by chromosome and keep the header?

1 vote
Accepted

What samples can be used for a Mutect2 Panel of Normals

0 votes

Get start and end coordinates per chromosome

0 votes

Meaning of the FORMAT fields of the VCF file coming from GIAB project

0 votes

How can I count the number of reads that support a variant in a bam file?

0 votes

Is there a read mapper that allows input in SAM format instead of FASTA/FASTQ?

0 votes
Accepted

Picard validation error regarding bin field of BAM file