User kcm

7 votes

1 answer

2k views

Density plot, scale it to 0-1

asked Dec 16, 2019 at 17:26

5 votes

1 answer

3k views

Splitting fasta file into smaller files based on header pattern

asked Mar 18, 2019 at 13:27

4 votes

1 answer

402 views

Extracting features or gene from PCA after calculating PCA for downstream analysis

asked Dec 12, 2017 at 16:17

4 votes

1 answer

1k views

Parsing gtf file for transcript ID and transcript name

asked Dec 5, 2018 at 17:55

4 votes

1 answer

785 views

How to plot p-values in a circular barplot?

asked Dec 10, 2018 at 17:44

3 votes

2 answers

168 views

Subset data frame by similar elements from rows and column between two data frames

asked Mar 22, 2018 at 11:31

3 votes

1 answer

3k views

3D PCA group labelling

asked Oct 29, 2018 at 17:28

3 votes

1 answer

346 views

Subset data frame based on ID

asked Nov 30, 2018 at 11:25

3 votes

3 answers

930 views

Kruskal-Wallis rank sum test output confusion

asked Jan 1, 2019 at 10:16

3 votes

1 answer

263 views

Pausing index calculation

asked Mar 11, 2020 at 10:34

3 votes

4 answers

1k views

Comparing phylogeny in R

asked May 25, 2020 at 7:44

3 votes

1 answer

108 views

Occupancy of TFs with the target genes

asked Jun 17, 2019 at 15:49

3 votes

2 answers

137 views

ATAC seq peak annotation : Which peak to choose for downstream analysis

asked Dec 11, 2020 at 11:35

3 votes

1 answer

169 views

the model matrix is not full rank : This is a classic question which a biologist face without clear understanding of the model design

asked Dec 18, 2020 at 10:34

3 votes

0 answers

65 views

LRT test in deseq2 on multiple condition

asked Mar 28, 2022 at 9:25

3 votes

1 answer

194 views

deseq2 makeContrasts function

asked Jun 20, 2022 at 22:36

3 votes

1 answer

87 views

Shell script to validate fastq issue

asked Sep 26 at 21:29

2 votes

1 answer

58 views

How to use the contrast function in ebayes for making different comparisons

asked Aug 3, 2022 at 18:08

2 votes

2 answers

115 views

Nanopore variant calling

asked Dec 6, 2021 at 11:26

2 votes

0 answers

139 views

Finding targets genes of putative transcription factor after homer motif enrichment

asked May 1, 2021 at 6:09

2 votes

0 answers

290 views

Convert MeSH term to drugbank ID

asked Sep 30, 2020 at 14:37

2 votes

1 answer

3k views

bedtool intersect multiple bed files

asked Nov 21, 2019 at 16:17

2 votes

0 answers

2k views

Annotation label not matching to the color assigned in complex heatmap

asked Jun 20, 2020 at 19:35

2 votes

0 answers

103 views

Circos plot with mutation data

asked Jan 7, 2019 at 14:38

2 votes

0 answers

412 views

Ploting FDR along with the pathway as heatmap any simple way

asked Jan 11, 2019 at 14:06

2 votes

1 answer

2k views

Complexheatmap update issue

asked Jan 13, 2019 at 16:20

2 votes

1 answer

122 views

Pathway plot in GeneTrail data base

asked Jan 29, 2019 at 7:21

2 votes

1 answer

161 views

Combat for multiplatform batch correction

asked Feb 20, 2019 at 11:32

2 votes

1 answer

76 views

Pattern matching and removing from the name

asked Apr 3, 2019 at 10:00

2 votes

0 answers

1k views

GO Term heatmap plot in terms of P value or fold enrichment

asked Oct 31, 2018 at 9:25

Stack Exchange Network

115 Questions

Density plot, scale it to 0-1

Splitting fasta file into smaller files based on header pattern

Extracting features or gene from PCA after calculating PCA for downstream analysis

Parsing gtf file for transcript ID and transcript name

How to plot p-values in a circular barplot?

Subset data frame by similar elements from rows and column between two data frames

3D PCA group labelling

Subset data frame based on ID

Kruskal-Wallis rank sum test output confusion

Pausing index calculation

Comparing phylogeny in R

Occupancy of TFs with the target genes

ATAC seq peak annotation : Which peak to choose for downstream analysis

the model matrix is not full rank : This is a classic question which a biologist face without clear understanding of the model design

LRT test in deseq2 on multiple condition

deseq2 makeContrasts function

Shell script to validate fastq issue

How to use the contrast function in ebayes for making different comparisons

Nanopore variant calling

Finding targets genes of putative transcription factor after homer motif enrichment

Convert MeSH term to drugbank ID

bedtool intersect multiple bed files

Annotation label not matching to the color assigned in complex heatmap

Circos plot with mutation data

Ploting FDR along with the pathway as heatmap any simple way

Complexheatmap update issue

Pathway plot in GeneTrail data base

Combat for multiplatform batch correction

Pattern matching and removing from the name

GO Term heatmap plot in terms of P value or fold enrichment