User kcm

1

7

votes

1

answer

288

views

Density plot, scale it to 0-1

r ggplot2

Jan 8 '20 at 11:19 Community♦ 1

4

votes

1

answer

2k

views

Splitting fasta file into smaller files based on header pattern

fasta shell

Mar 18 '19 at 17:09 Maxander 101

4

votes

1

answer

598

views

How to plot p-values in a circular barplot?

r visualization ggplot2

Dec 11 '18 at 14:36 Tom Kelly 863

1

4

votes

1

answer

220

views

Extracting features or gene from PCA after calculating PCA for downstream analysis

r rna-seq

Dec 14 '17 at 7:48 llrs 4,512

3

votes

1

answer

86

views

the model matrix is not full rank : This is a classic question which a biologist face without clear understanding of the model design

r deseq2 design

Dec 19 at 0:37 swbarnes2 1,560

2

3

votes

4

answers

406

views

Comparing phylogeny in R

r phylogenetics

Jun 2 '20 at 9:49 llrs 4,512

3

votes

1

answer

81

views

Occupancy of TFs with the target genes

visualization chip-seq peak-calling

Jun 19 '19 at 13:28 Devon Ryan♦ 18.7k

1

3

votes

3

answers

547

views

Kruskal-Wallis rank sum test output confusion

r

Jan 3 '19 at 22:24 M__ 5,723

3

votes

1

answer

553

views

Parsing gtf file for transcript ID and transcript name

gtf text-processing

Dec 6 '18 at 20:23 terdon 7,505

3

votes

1

answer

272

views

Subset data frame based on ID

r

Nov 30 '18 at 14:41 terdon 7,505

3

votes

2

answers

161

views

Subset data frame by similar elements from rows and column between two data frames

r

Apr 9 '18 at 4:18 Melissa Key 126

2

votes

0

answers

22

views

Finding targets genes of putative transcription factor after homer motif enrichment

atac-seq homer

May 1 at 6:09 kcm 1,432

2

votes

2

answers

61

views

ATAC seq peak annotation : Which peak to choose for downstream analysis

r atac-seq

Dec 11 at 23:32 StupidWolf 1,628

2

votes

0

answers

229

views

Annotation label not matching to the color assigned in complex heatmap

r covid-19 sars-cov-2 complexheatmap

Dec 8 at 13:18 M__ 5,723

2

votes

1

answer

95

views

Pausing index calculation

homer

Mar 11 '20 at 16:06 StupidWolf 1,628

1

2

votes

1

answer

1k

views

bedtool intersect multiple bed files

bedtools

Nov 21 '19 at 16:33 Paul Endymion 342

2

votes

1

answer

1k

views

Complexheatmap update issue

r visualization heatmap

May 11 '19 at 15:56 Ram RS 1,216

2

votes

0

answers

849

views

GO Term heatmap plot in terms of P value or fold enrichment

r rna-seq visualization figure-reproduction heatmap

May 11 '19 at 7:13 zx8754 1,052

1

2

votes

1

answer

69

views

Pattern matching and removing from the name

r

Apr 4 '19 at 8:23 zx8754 1,052

2

votes

1

answer

96

views

Combat for multiplatform batch correction

r microarray batch-effects

Feb 20 '19 at 13:34 llrs 4,512

2

votes

1

answer

65

views

Pathway plot in GeneTrail data base

r rna-seq pathway figure-explanation

Jan 29 '19 at 8:44 llrs 4,512

2

votes

0

answers

191

views

Ploting FDR along with the pathway as heatmap any simple way

r visualization

Jan 11 '19 at 14:06 kcm 1,432

2

votes

0

answers

75

views

Circos plot with mutation data

circos

Jan 7 '19 at 14:38 kcm 1,432

1

2

votes

1

answer

919

views

Extracting genes from corrplot and adding labels based on high and low corelation

r visualization correlation

Dec 19 '18 at 12:19 user3479780 407

2

votes

0

answers

452

views

corrplot issue with correlation plot output

r visualization

Dec 17 '18 at 17:53 kcm 1,432

2

votes

0

answers

51

views

Cicros plot issue using two data track

circos

Dec 16 '18 at 15:32 Devon Ryan♦ 18.7k

2

votes

0

answers

110

views

How to plot gene mutation frequencey in terms of percnatge alteration in samples?

r ggplot2

Nov 27 '18 at 10:36 llrs 4,512

1

2

votes

1

answer

2k

views

3D PCA group labelling

r statistics visualization pca

Oct 31 '18 at 10:26 Ammar Sabir Cheema 891

2

votes

2

answers

382

views

Parse out exon coordinates from bed file for each gene

r bed bedtools perl

Jan 9 '18 at 11:44 llrs 4,512

1

vote

0

answers

31

views

Doing functional enrichment of microbiome data

nanopore

Jul 20 at 19:33 Ram RS 1,216

Stack Exchange Network

current community

your communities

more stack exchange communities

Next privilege

Next badge

102 Questions

Density plot, scale it to 0-1

Splitting fasta file into smaller files based on header pattern

How to plot p-values in a circular barplot?

Extracting features or gene from PCA after calculating PCA for downstream analysis

the model matrix is not full rank : This is a classic question which a biologist face without clear understanding of the model design

Comparing phylogeny in R

Occupancy of TFs with the target genes

Kruskal-Wallis rank sum test output confusion

Parsing gtf file for transcript ID and transcript name

Subset data frame based on ID

Subset data frame by similar elements from rows and column between two data frames

Finding targets genes of putative transcription factor after homer motif enrichment

ATAC seq peak annotation : Which peak to choose for downstream analysis

Annotation label not matching to the color assigned in complex heatmap

Pausing index calculation

bedtool intersect multiple bed files

Complexheatmap update issue

GO Term heatmap plot in terms of P value or fold enrichment

Pattern matching and removing from the name

Combat for multiplatform batch correction

Pathway plot in GeneTrail data base

Ploting FDR along with the pathway as heatmap any simple way

Circos plot with mutation data

Extracting genes from corrplot and adding labels based on high and low corelation

corrplot issue with correlation plot output

Cicros plot issue using two data track

How to plot gene mutation frequencey in terms of percnatge alteration in samples?

3D PCA group labelling

Parse out exon coordinates from bed file for each gene

Doing functional enrichment of microbiome data