User kcm

7 votes

1 answer

621 views

Density plot, scale it to 0-1

r ggplot2

asked Dec 16, 2019 at 17:26

5 votes

1 answer

2k views

Splitting fasta file into smaller files based on header pattern

fasta shell

asked Mar 18, 2019 at 13:27

4 votes

1 answer

236 views

Extracting features or gene from PCA after calculating PCA for downstream analysis

r rna-seq

asked Dec 12, 2017 at 16:17

4 votes

1 answer

687 views

How to plot p-values in a circular barplot?

r visualization ggplot2

asked Dec 10, 2018 at 17:44

3 votes

1 answer

298 views

Subset data frame based on ID

r

asked Nov 30, 2018 at 11:25

3 votes

1 answer

657 views

Parsing gtf file for transcript ID and transcript name

gtf text-processing

asked Dec 5, 2018 at 17:55

3 votes

2 answers

163 views

Subset data frame by similar elements from rows and column between two data frames

r

asked Mar 22, 2018 at 11:31

3 votes

3 answers

631 views

Kruskal-Wallis rank sum test output confusion

r

asked Jan 1, 2019 at 10:16

3 votes

1 answer

90 views

Occupancy of TFs with the target genes

visualization chip-seq peak-calling

asked Jun 17, 2019 at 15:49

3 votes

4 answers

570 views

Comparing phylogeny in R

r phylogenetics

asked May 25, 2020 at 7:44

3 votes

0 answers

24 views

LRT test in deseq2 on multiple condition

r deseq2

asked Mar 28 at 9:25

3 votes

1 answer

109 views

the model matrix is not full rank : This is a classic question which a biologist face without clear understanding of the model design

r deseq2 design

asked Dec 18, 2020 at 10:34

2 votes

0 answers

240 views

Ploting FDR along with the pathway as heatmap any simple way

r visualization

asked Jan 11, 2019 at 14:06

2 votes

0 answers

54 views

Cicros plot issue using two data track

circos

asked Dec 14, 2018 at 9:41

2 votes

0 answers

56 views

Finding targets genes of putative transcription factor after homer motif enrichment

atac-seq homer

asked May 1, 2021 at 6:09

2 votes

2 answers

64 views

Nanopore variant calling

variant-calling nanopore

asked Dec 6, 2021 at 11:26

2 votes

2 answers

73 views

ATAC seq peak annotation : Which peak to choose for downstream analysis

r atac-seq

asked Dec 11, 2020 at 11:35

2 votes

0 answers

158 views

Convert MeSH term to drugbank ID

public-databases drugs

asked Sep 30, 2020 at 14:37

2 votes

0 answers

602 views

Annotation label not matching to the color assigned in complex heatmap

r covid-19 sars-cov-2 complexheatmap

asked Jun 20, 2020 at 19:35

2 votes

1 answer

2k views

bedtool intersect multiple bed files

bedtools

asked Nov 21, 2019 at 16:17

2 votes

1 answer

149 views

Pausing index calculation

homer

asked Mar 11, 2020 at 10:34

2 votes

1 answer

69 views

Pattern matching and removing from the name

r

asked Apr 3, 2019 at 10:00

2 votes

0 answers

83 views

Circos plot with mutation data

circos

asked Jan 7, 2019 at 14:38

2 votes

1 answer

1k views

Complexheatmap update issue

r visualization heatmap

asked Jan 13, 2019 at 16:20

2 votes

1 answer

80 views

Pathway plot in GeneTrail data base

r rna-seq pathway figure-explanation

asked Jan 29, 2019 at 7:21

2 votes

1 answer

112 views

Combat for multiplatform batch correction

r microarray batch-effects

asked Feb 20, 2019 at 11:32

2 votes

0 answers

544 views

corrplot issue with correlation plot output

r visualization

asked Dec 17, 2018 at 17:53

2 votes

1 answer

1k views

Extracting genes from corrplot and adding labels based on high and low corelation

r visualization correlation

asked Dec 18, 2018 at 16:53

2 votes

2 answers

463 views

Parse out exon coordinates from bed file for each gene

r bed bedtools perl

asked Jan 7, 2018 at 15:04

2 votes

1 answer

2k views

3D PCA group labelling

r statistics visualization pca

asked Oct 29, 2018 at 17:28

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107 Questions

Density plot, scale it to 0-1

Splitting fasta file into smaller files based on header pattern

Extracting features or gene from PCA after calculating PCA for downstream analysis

How to plot p-values in a circular barplot?

Subset data frame based on ID

Parsing gtf file for transcript ID and transcript name

Subset data frame by similar elements from rows and column between two data frames

Kruskal-Wallis rank sum test output confusion

Occupancy of TFs with the target genes

Comparing phylogeny in R

LRT test in deseq2 on multiple condition

the model matrix is not full rank : This is a classic question which a biologist face without clear understanding of the model design

Ploting FDR along with the pathway as heatmap any simple way

Cicros plot issue using two data track

Finding targets genes of putative transcription factor after homer motif enrichment

Nanopore variant calling

ATAC seq peak annotation : Which peak to choose for downstream analysis

Convert MeSH term to drugbank ID

Annotation label not matching to the color assigned in complex heatmap

bedtool intersect multiple bed files

Pausing index calculation

Pattern matching and removing from the name

Circos plot with mutation data

Complexheatmap update issue

Pathway plot in GeneTrail data base

Combat for multiplatform batch correction

corrplot issue with correlation plot output

Extracting genes from corrplot and adding labels based on high and low corelation

Parse out exon coordinates from bed file for each gene

3D PCA group labelling