User kcm

1 vote

3 answers

5k views

Preparing data for UpSet Plot in R

asked May 30, 2018 at 13:58

2 votes

1 answer

3k views

3D PCA group labelling

asked Oct 29, 2018 at 17:28

5 votes

1 answer

2k views

Splitting fasta file into smaller files based on header pattern

asked Mar 18, 2019 at 13:27

2 votes

1 answer

2k views

bedtool intersect multiple bed files

asked Nov 21, 2019 at 16:17

0 votes

1 answer

2k views

Intersecting multiple data frames

asked Jul 31, 2019 at 5:59

7 votes

1 answer

2k views

Density plot, scale it to 0-1

asked Dec 16, 2019 at 17:26

2 votes

1 answer

1k views

Complexheatmap update issue

asked Jan 13, 2019 at 16:20

2 votes

1 answer

1k views

Extracting genes from corrplot and adding labels based on high and low corelation

asked Dec 18, 2018 at 16:53

2 votes

0 answers

1k views

Annotation label not matching to the color assigned in complex heatmap

asked Jun 20, 2020 at 19:35

2 votes

0 answers

1k views

GO Term heatmap plot in terms of P value or fold enrichment

asked Oct 31, 2018 at 9:25

1 vote

1 answer

1k views

removing mitochondrial read and unassembled "random" from multiple bam files

asked Apr 16, 2019 at 7:18

3 votes

1 answer

922 views

Parsing gtf file for transcript ID and transcript name

asked Dec 5, 2018 at 17:55

3 votes

4 answers

864 views

Comparing phylogeny in R

asked May 25, 2020 at 7:44

3 votes

3 answers

824 views

Kruskal-Wallis rank sum test output confusion

asked Jan 1, 2019 at 10:16

4 votes

1 answer

749 views

How to plot p-values in a circular barplot?

asked Dec 10, 2018 at 17:44

1 vote

2 answers

688 views

t-sne code and labelling issue for rna seq data

asked Dec 13, 2017 at 13:23

1 vote

1 answer

685 views

Kruskal–Wallis and wilcox.test choice of test for expression data

asked May 31, 2019 at 10:11

2 votes

0 answers

653 views

corrplot issue with correlation plot output

asked Dec 17, 2018 at 17:53

2 votes

2 answers

630 views

Parse out exon coordinates from bed file for each gene

asked Jan 7, 2018 at 15:04

-1 votes

1 answer

624 views

Boxplot of kmean cluster

asked Sep 18, 2018 at 17:50

0 votes

1 answer

597 views

Tag density plot form chip or atac seq data

asked Oct 23, 2019 at 9:51

0 votes

1 answer

560 views

Mutation annotation to the heatmap

asked Feb 24, 2019 at 18:25

0 votes

1 answer

546 views

Find intersection among multiple columns and find the intersected elements [closed]

asked Sep 15, 2020 at 10:18

1 vote

1 answer

535 views

log2fold change as heatmap

asked Apr 8, 2019 at 5:56

0 votes

1 answer

493 views

Removing stop codons from alignment file for dn/ds calculation

asked Jun 12, 2020 at 8:59

-1 votes

1 answer

463 views

WGCNA module preservation doubt

asked Dec 4, 2019 at 10:11

1 vote

1 answer

444 views

Batch alignment of inconsistently named Fastq files

asked Mar 25, 2019 at 13:40

0 votes

2 answers

405 views

parsimony and maximum likelihood tree comparison in R

asked Jun 6, 2020 at 18:23

1 vote

1 answer

394 views

ATAC-seq peak annotation and downstream analysis

asked Nov 14, 2019 at 10:20

1 vote

1 answer

373 views

TCGA data sets joining multiple files

asked Jan 23, 2018 at 10:53

Stack Exchange Network

112 Questions

Preparing data for UpSet Plot in R

3D PCA group labelling

Splitting fasta file into smaller files based on header pattern

bedtool intersect multiple bed files

Intersecting multiple data frames

Density plot, scale it to 0-1

Complexheatmap update issue

Extracting genes from corrplot and adding labels based on high and low corelation

Annotation label not matching to the color assigned in complex heatmap

GO Term heatmap plot in terms of P value or fold enrichment

removing mitochondrial read and unassembled "random" from multiple bam files

Parsing gtf file for transcript ID and transcript name

Comparing phylogeny in R

Kruskal-Wallis rank sum test output confusion

How to plot p-values in a circular barplot?

t-sne code and labelling issue for rna seq data

Kruskal–Wallis and wilcox.test choice of test for expression data

corrplot issue with correlation plot output

Parse out exon coordinates from bed file for each gene

Boxplot of kmean cluster

Tag density plot form chip or atac seq data

Mutation annotation to the heatmap

Find intersection among multiple columns and find the intersected elements [closed]

log2fold change as heatmap

Removing stop codons from alignment file for dn/ds calculation

WGCNA module preservation doubt

Batch alignment of inconsistently named Fastq files

parsimony and maximum likelihood tree comparison in R

ATAC-seq peak annotation and downstream analysis

TCGA data sets joining multiple files