User kcm

1 vote

0 answers

167 views

chip seq biological replicate merge after peak-calling

asked May 10, 2022 at 21:48

2 votes

1 answer

166 views

Combat for multiplatform batch correction

asked Feb 20, 2019 at 11:32

0 votes

1 answer

160 views

Calculating Synonymous and non-synonymous

asked Jun 9, 2020 at 14:02

1 vote

2 answers

158 views

ATAC seq density calculation

asked Feb 25, 2021 at 20:33

3 votes

2 answers

158 views

ATAC seq peak annotation : Which peak to choose for downstream analysis

asked Dec 11, 2020 at 11:35

1 vote

1 answer

153 views

GC normalization ATAC seq data

asked Dec 5, 2020 at 7:02

2 votes

0 answers

152 views

Finding targets genes of putative transcription factor after homer motif enrichment

asked May 1, 2021 at 6:09

3 votes

1 answer

144 views

Shell script to validate fastq issue

asked Sep 26, 2023 at 21:29

0 votes

1 answer

144 views

Mapping probe ID to gene name

asked Aug 17, 2019 at 10:28

1 vote

1 answer

137 views

Comparing aligned amino acids to codon

asked Jul 6, 2020 at 11:52

-1 votes

1 answer

136 views

R error: could not find function "pathwayAnalysis"

asked Jul 9, 2019 at 14:49

2 votes

1 answer

127 views

Pathway plot in GeneTrail data base

asked Jan 29, 2019 at 7:21

0 votes

0 answers

125 views

kraken2 output to OTU table

asked Jun 26, 2020 at 22:54

-1 votes

1 answer

124 views

Compare nucleotide mutation with amino acid

asked Jun 1, 2020 at 10:27

2 votes

2 answers

119 views

Nanopore variant calling

asked Dec 6, 2021 at 11:26

-1 votes

1 answer

118 views

Regular expression struggle

asked Jun 8, 2019 at 7:24

1 vote

0 answers

110 views

Circos plot issue

asked Oct 1, 2018 at 10:21

3 votes

1 answer

108 views

Occupancy of TFs with the target genes

asked Jun 17, 2019 at 15:49

1 vote

1 answer

105 views

deseq2 model design : Different gene output

asked Jun 21, 2022 at 13:13

2 votes

0 answers

103 views

Circos plot with mutation data

asked Jan 7, 2019 at 14:38

0 votes

1 answer

101 views

europmc and tidypmc R library for extracting or making metadata from publication

asked Jul 24, 2020 at 10:38

0 votes

1 answer

97 views

gnu parallel for macs peak calling

asked Mar 2, 2020 at 10:38

1 vote

0 answers

96 views

Missing lower IQR in boxplot [closed]

asked Mar 20, 2019 at 7:01

1 vote

1 answer

90 views

Merging based on Chromosome coordinates

asked Mar 29, 2020 at 18:11

0 votes

1 answer

86 views

Pol_II genome wide occupancy analysis

asked Mar 5, 2020 at 11:04

0 votes

0 answers

86 views

ATAC and RNA seq Up regulated region gene and scatter

asked Jan 9, 2021 at 16:25

0 votes

1 answer

85 views

multiBamSummary output chromosome region annotate issue

asked Nov 25, 2019 at 5:54

1 vote

0 answers

81 views

building custom gtf file with entrez ID for any organism

asked Jul 2, 2023 at 6:32

-1 votes

1 answer

80 views

Module preservation and hub genes finding

asked Jan 10, 2020 at 14:26

0 votes

0 answers

79 views

Peak Specific to condition in ATAC seq data

asked Jan 18, 2021 at 7:18

Stack Exchange Network

115 Questions

chip seq biological replicate merge after peak-calling

Combat for multiplatform batch correction

Calculating Synonymous and non-synonymous

ATAC seq density calculation

ATAC seq peak annotation : Which peak to choose for downstream analysis

GC normalization ATAC seq data

Finding targets genes of putative transcription factor after homer motif enrichment

Shell script to validate fastq issue

Mapping probe ID to gene name

Comparing aligned amino acids to codon

R error: could not find function "pathwayAnalysis"

Pathway plot in GeneTrail data base

kraken2 output to OTU table

Compare nucleotide mutation with amino acid

Nanopore variant calling

Regular expression struggle

Circos plot issue

Occupancy of TFs with the target genes

deseq2 model design : Different gene output

Circos plot with mutation data

europmc and tidypmc R library for extracting or making metadata from publication

gnu parallel for macs peak calling

Missing lower IQR in boxplot [closed]

Merging based on Chromosome coordinates

Pol_II genome wide occupancy analysis

ATAC and RNA seq Up regulated region gene and scatter

multiBamSummary output chromosome region annotate issue

building custom gtf file with entrez ID for any organism

Module preservation and hub genes finding

Peak Specific to condition in ATAC seq data