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Konrad Rudolph's user avatar
Konrad Rudolph's user avatar
Konrad Rudolph's user avatar
Konrad Rudolph
  • Member for 7 years
  • Last seen this week
62 votes
Accepted

What is the difference between FASTA, FASTQ, and SAM file formats?

31 votes
Accepted

How to compute RPKM in R?

18 votes

R package development: How does one automatically install Bioconductor packages upon package installation?

14 votes

Are there any RepBase alternatives for genome-wide repeat element annotations?

13 votes

What methods are available to find a cutoff value for non-expressed genes in RNA-seq?

11 votes

Downloading a reference Genome for Bowtie2

9 votes
Accepted

Converting gene names from one public database format to another

9 votes

What are the ways to keep track of branches in the analysis?

9 votes
Accepted

Calculating average coverage for .bam files (sequence data)

7 votes

Fast way to count number of reads and number of bases in a fastq file?

7 votes

How to append numbers only on duplicates sequence names?

7 votes
Accepted

Merging sequencing data for ChIP-seq experiments

7 votes

How do I efficiently subset a very large line-based file?

6 votes

How can I extract normalized read count values from DESeq2 results?

6 votes
Accepted

Count genomic ranges

6 votes

Cannot install chromosomer

6 votes
Accepted

Is there an efficient way to check an input BAM in R?

6 votes
Accepted

Off-by-one error when mapping Ensembl IDs to gene symbols

5 votes

How should the popular press compare similarity of genomes?

5 votes
Accepted

Use of heterozygous SNPs in cancer research: why?

5 votes

Why does the FASTA sequence for coronavirus look like DNA, not RNA?

5 votes

Error creating indices using STAR

5 votes

How can I find mutations associated with disease in human histone residues?

5 votes

What is the fastest way to calculate the number of unknown nucleotides in FASTA / FASTQ files?

5 votes

Generic HMM solvers in bioinformatics?

4 votes

Are there any rolling hash functions that can hash a DNA sequence and its reverse complement to the same value?

4 votes

Multiple sequence alignment with R

4 votes

Library for computing BWT-based alignments

4 votes

Annotation format design

4 votes

How to convert fasta file to tab delimited file