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bli
  • Member for 6 years, 11 months
  • Last seen more than a month ago
3 votes

To create a new column with Pandas on the basis of two types of column values

3 votes

Suggestion for python graphics library to plot aligned protein sequences

1 vote

How to measure the total size of a fastq file in base pairs?

6 votes

What is the fastest way to calculate the number of unknown nucleotides in FASTA / FASTQ files?

3 votes

Trying to divide number in fourth TSV column by a certain number according to its corresponding identifier in the first column

2 votes

Convert FASTA to FASTQ with dummy quality scores

3 votes
Accepted

Why is 42 the seed used in RunPCA() in Seurat?

1 vote
Accepted

Calculate the occurrence of motif in sequences (including overlaps) using Python

3 votes

How to create Phylogenetic Trees from fasta files in Python or R?

4 votes
Accepted

Group genes by functional categories suming expression values

2 votes

Bash scripting FastQC for multiple fastq files in multiple directories

4 votes
Accepted

Output file names are not known beforehand

6 votes
Accepted

Using pysam with cython: htslib/kstring.h not found

2 votes
Accepted

How to efficiently extract coordinates from a `pybedtools.Interval`?

8 votes

tRNAscan-SE error: FATAL: Unable to find /usr/local/bin/cmsearch executable

1 vote

counting individuals with the present gene and absent gene for each population

4 votes
Accepted

How can I easily get the read size distribution of reads mapping on a certain set of regions?

6 votes
Accepted

How can I reproduce a manual NCBI search with Biopython Entrez module?

2 votes

assigning different characters to present and absent genes from blast output using perl or python

2 votes

How to demultiplex pair-end fastq reads with barcode 2 in the identifier line?

2 votes

replacing SNPs with missing calls with a specific string

3 votes
Accepted

How can I apply proportional (p) distances (Nucleotide) using bioPython

4 votes

Automating sequence download from Wormbase

0 votes

Convert population allele count into population allele frequency by using Perl or Python (translate available Bash into Perl or Python)

7 votes

How to convert fasta file to tab delimited file

2 votes

Subset FASTA file by species name

7 votes
Accepted

Y Chromosome Aligned Reads in scATAC-seq data from a female-derived cell line?

5 votes

How can I read FCS files using open source libraries?

0 votes

Workflow of metabarcoding analysis

1 vote

Fast way to count number of reads and number of bases in a fastq file?