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bli
  • Member for 6 years, 11 months
  • Last seen more than a month ago
19 votes
Accepted

How do you write a .gz fastq file with Biopython?

15 votes

How to convert FASTA to BED

10 votes
Accepted

Understanding DESeq2 design, contrast and results

8 votes

tRNAscan-SE error: FATAL: Unable to find /usr/local/bin/cmsearch executable

7 votes

How to convert fasta file to tab delimited file

7 votes

Are there any databases of templates for common bioinformatic file formats?

7 votes
Accepted

Y Chromosome Aligned Reads in scATAC-seq data from a female-derived cell line?

6 votes

What is the fastest way to calculate the number of unknown nucleotides in FASTA / FASTQ files?

6 votes
Accepted

How can I reproduce a manual NCBI search with Biopython Entrez module?

6 votes
Accepted

Using pysam with cython: htslib/kstring.h not found

5 votes

How can I read FCS files using open source libraries?

4 votes

Read length distribution from FASTA file

4 votes

How do I efficiently subset a very large line-based file?

4 votes
Accepted

Output file names are not known beforehand

4 votes
Accepted

Group genes by functional categories suming expression values

4 votes
Accepted

How can I easily get the read size distribution of reads mapping on a certain set of regions?

4 votes

Automating sequence download from Wormbase

3 votes
Accepted

How can I apply proportional (p) distances (Nucleotide) using bioPython

3 votes

How to create Phylogenetic Trees from fasta files in Python or R?

3 votes
Accepted

Why is 42 the seed used in RunPCA() in Seurat?

3 votes

What is the best way to account for GC-content shift while constructing nucleotide-based phylogenetic tree?

3 votes

Trying to divide number in fourth TSV column by a certain number according to its corresponding identifier in the first column

3 votes

Suggestion for python graphics library to plot aligned protein sequences

3 votes

To create a new column with Pandas on the basis of two types of column values

3 votes

Range overlap python error with genomic regions

2 votes

Entrez or Ensembl gene IDs?

2 votes

Subset FASTA file by species name

2 votes

Convert FASTA to FASTQ with dummy quality scores

2 votes

Bash scripting FastQC for multiple fastq files in multiple directories

2 votes
Accepted

How to efficiently extract coordinates from a `pybedtools.Interval`?