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bli
  • Member for 7 years
  • Last seen more than a month ago
19 votes
2 answers
11k views

Understanding DESeq2 design, contrast and results

19 votes
2 answers
12k views

How can I extract normalized read count values from DESeq2 results?

8 votes
5 answers
3k views

Merging bed records based on name

7 votes
1 answer
855 views

What unit do I get on the y-axis of a metagene profile plot?

7 votes
1 answer
765 views

Using pysam with cython: htslib/kstring.h not found

6 votes
2 answers
2k views

Running differential expression analyses on count matrices with many zeroes

6 votes
1 answer
274 views

What is this 5-column sequencing format from 2009?

6 votes
2 answers
582 views

Same transcript coordinates in gtf file, different transcript ID

5 votes
2 answers
3k views

How can I easily get the read size distribution of reads mapping on a certain set of regions?

5 votes
1 answer
188 views

Dealing with absence of coverage

5 votes
1 answer
549 views

Customizing bigWig file

4 votes
1 answer
350 views

What kind of "gff" format does bioawk parse?

4 votes
1 answer
396 views

Adding entries to bigwig file

4 votes
1 answer
289 views

How can I reproduce a manual NCBI search with Biopython Entrez module?

3 votes
1 answer
75 views

Automating sequence download from Wormbase

3 votes
1 answer
3k views

Counts obtained by featureCounts seem much less than observed coverage

3 votes
1 answer
101 views

Detecting broad peaks in sRNA-seq data

1 vote
1 answer
109 views

How to detect bedtools version used by pybedtools (in order to correctly preserve strand information when merging gtf records)

1 vote
1 answer
184 views

How to efficiently extract coordinates from a `pybedtools.Interval`?

1 vote
4 answers
471 views

At what processing step should library strandedness type be taken into account?

0 votes
2 answers
349 views

Filtering bam file with bedtools intersect using strand specificity