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bli
  • Member for 7 years, 1 month
  • Last seen more than a month ago
1 vote
1 answer
115 views

How to detect bedtools version used by pybedtools (in order to correctly preserve strand information when merging gtf records)

3 votes
1 answer
101 views

Detecting broad peaks in sRNA-seq data

7 votes
1 answer
769 views

Using pysam with cython: htslib/kstring.h not found

1 vote
1 answer
186 views

How to efficiently extract coordinates from a `pybedtools.Interval`?

0 votes
2 answers
352 views

Filtering bam file with bedtools intersect using strand specificity

5 votes
2 answers
3k views

How can I easily get the read size distribution of reads mapping on a certain set of regions?

4 votes
1 answer
290 views

How can I reproduce a manual NCBI search with Biopython Entrez module?

3 votes
1 answer
75 views

Automating sequence download from Wormbase

6 votes
1 answer
274 views

What is this 5-column sequencing format from 2009?

4 votes
1 answer
407 views

Adding entries to bigwig file

5 votes
1 answer
188 views

Dealing with absence of coverage

8 votes
5 answers
3k views

Merging bed records based on name

6 votes
2 answers
588 views

Same transcript coordinates in gtf file, different transcript ID

3 votes
1 answer
3k views

Counts obtained by featureCounts seem much less than observed coverage

1 vote
4 answers
473 views

At what processing step should library strandedness type be taken into account?

6 votes
2 answers
2k views

Running differential expression analyses on count matrices with many zeroes

5 votes
1 answer
555 views

Customizing bigWig file

4 votes
1 answer
351 views

What kind of "gff" format does bioawk parse?

7 votes
1 answer
860 views

What unit do I get on the y-axis of a metagene profile plot?

19 votes
2 answers
12k views

How can I extract normalized read count values from DESeq2 results?

19 votes
2 answers
11k views

Understanding DESeq2 design, contrast and results