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aechchiki
  • Member for 5 years
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8 votes

Extracting expression data from GSE dataset downloaded from GEO

6 votes

What format is this? Pretty sure it's not a BED file

6 votes
Accepted

Cufflinks Error: sort order of reads in BAMs must be the same

6 votes
Accepted

full visualisation of draft genomes alignment

5 votes
Accepted

How to measure the total size of a fastq file in base pairs?

5 votes
Accepted

Salmon tximport

4 votes
Accepted

visualisation of genome alignment

4 votes

Converting a BAM file into VCF

4 votes

Is there a way to quickly verify the presence of some SNPs in Fastq files?

4 votes

How to extract / convert gff3 CDS sequences to multifasta

4 votes
Accepted

How to find novel transcripts using GFFcompare?

3 votes

Produce a single sequential FASTA sequence out of BAM

3 votes
Accepted

Correspondance of SARS-CoV-2 annotations (Nextclade - Pangolin)

2 votes
Accepted

PASA pipeline: compare experimental transcripts to the reference annotation

2 votes

At what processing step should library strandedness type be taken into account?

2 votes

How to get Nanopore MinION fast5 from SRA

2 votes
Accepted

gffread: GFaSeqGet errors on coordinate overhang

2 votes

What is a standard approach to binarize microarray gene expression data?

1 vote
Accepted

Is it possible to find out the PacBio chemistry from the PacBio Sequel BAM's header?

1 vote

Exon-exon junctions: compare experimental transcripts to reference annotation

1 vote

Introduce errors in reference transcripts according to external dataset error model

1 vote

Is it wise to use RepeatMasker on prokaryotes?

1 vote
Accepted

Mark BWA-SW split alignments in output for long reads

1 vote

full visualisation of draft genomes alignment