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aechchiki
  • Member for 5 years, 2 months
  • Last seen more than a week ago
15 votes
4 answers
4k views

How to convert BED to GFF3

9 votes
3 answers
3k views

How to convert GFF3 to GTF2

13 votes
2 answers
2k views

How to convert fastq to fast5

7 votes
3 answers
2k views

visualisation of genome alignment

8 votes
2 answers
1k views

estimate genome size: kmer-based approach from PacBio reads

6 votes
1 answer
1k views

STAR-long parameters for aligning RNA ONT reads to genome

7 votes
1 answer
1k views

Coverage calculation: long reads (RNA-seq)

4 votes
1 answer
995 views

get gene lines from gtf file

5 votes
2 answers
672 views

full visualisation of draft genomes alignment

3 votes
1 answer
626 views

gffread: GFaSeqGet errors on coordinate overhang

2 votes
3 answers
619 views

Get start and end coordinates per chromosome

6 votes
3 answers
457 views

tools to reconcile experimental transcripts with reference annotation

6 votes
1 answer
358 views

PASA pipeline: compare experimental transcripts to the reference annotation

6 votes
1 answer
276 views

Run gffread in multi-thread mode

9 votes
2 answers
275 views

calling diploid SNVs from long reads

6 votes
1 answer
270 views

Salmon output: transcripts quantified with zero reads support

8 votes
1 answer
243 views

Convert local alignments to spliced alignments in SAM file

4 votes
2 answers
239 views

Exon-exon junctions: compare experimental transcripts to reference annotation

5 votes
1 answer
160 views

Documentation for Transfrag class codes (cuffcompare)

6 votes
1 answer
155 views

Verify a predicted protein in one genome in a different genome of the same species

0 votes
2 answers
138 views

merge rows (to columns) in R dataframe based on IDs

5 votes
1 answer
131 views

Find paralogs in a draft genome

9 votes
0 answers
129 views

Run cuffcompare in strand-agnostic mode

3 votes
2 answers
105 views

Correspondance of SARS-CoV-2 annotations (Nextclade - Pangolin)

8 votes
4 answers
102 views

Introduce errors in reference transcripts according to external dataset error model

1 vote
1 answer
91 views

swap genotypes for specific fields of a vcf file