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Soerendip
  • Member for 5 years, 10 months
  • Last seen more than a month ago
6 votes
5 answers
6k views

How to create Phylogenetic Trees from fasta files in Python or R?

5 votes
2 answers
4k views

How to run MaxQuant in command line mode?

5 votes
1 answer
90 views

Does Prokka do six-frame translations?

4 votes
1 answer
130 views

How to quantify similarity of genomes and find differences in set of S aureus genomes?

3 votes
1 answer
232 views

How to load output from the kegg API in biopython into a pandas dataframe?

3 votes
1 answer
516 views

How to plot genomic.fna fasta file in R using Gviz?

3 votes
1 answer
359 views

Difference between genometools installed with anaconda vs apt-get?

3 votes
4 answers
8k views

Can a gff file be converted to a fasta file?

3 votes
1 answer
392 views

How to remove frame on RDKit figures?

3 votes
1 answer
71 views

Why does a missing label 11plex TMT shows up at almost 50% intensity compared to other labels?

2 votes
2 answers
2k views

Is there a Python package to convert InChi to molecular structures?

2 votes
3 answers
1k views

How to retrieve dataset names from python statsmodels?

2 votes
2 answers
405 views

How to use pyopenms.FeatureFindingMetabo() for peak picking in pyOpenMS?

2 votes
1 answer
24 views

Search ChebiEntity search by common or synonym name?

2 votes
1 answer
61 views

Get a comprehensive list of virulence factors for certain or all pathogens?

2 votes
0 answers
20 views

When to use Ariba vs Roary or other genomics tools to call drug-resistance variants?

1 vote
0 answers
134 views

How to extract certain genes including non-coding regions?

1 vote
1 answer
135 views

Getting System.IO.FileNotFoundException with MaxQuant running on Linux with mono

1 vote
1 answer
3k views

How to convert a SDF molecular structure file to a pandas dataframe with Python?

1 vote
1 answer
44 views

Database to download with information of bacteria?

1 vote
1 answer
38 views

Can Maven (mass spectrometry software) read mzML files?

1 vote
0 answers
29 views

Call NCBI Multiple Sequence Alignment Viewer with target URL?

1 vote
1 answer
22 views

What is the best way to drop alignment artifacts in sequence objects in biopython?

1 vote
0 answers
148 views

How to do protein quantification with Peptideshaker output (TMT labeled, MS2)?

1 vote
0 answers
25 views

Can MSstatsTMT be used for both MS2 and MS3 runs?

1 vote
1 answer
920 views

What is the purpose of 'Folder locations' in MaxQuant?

1 vote
0 answers
56 views

What is the purpose of the "fixedSearchFolder" and "fixedCombinedFolder" in MaxQuant?

1 vote
0 answers
20 views

How to download all reactions of the TCA cycle from the RHEA database with the SPARQL endpoint?

1 vote
1 answer
171 views

How to export peptide-shaker data from commandline?

1 vote
1 answer
369 views

Rdkit.Chem.Draw.savefig() creates empty figures