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Soerendip
  • Member for 5 years, 11 months
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3 votes
4 answers
8k views

Can a gff file be converted to a fasta file?

6 votes
5 answers
6k views

How to create Phylogenetic Trees from fasta files in Python or R?

5 votes
2 answers
4k views

How to run MaxQuant in command line mode?

1 vote
2 answers
3k views

Calculate molecular mass from chemical formula C9H15N4O8P with Python?

1 vote
1 answer
3k views

How to convert a SDF molecular structure file to a pandas dataframe with Python?

2 votes
2 answers
2k views

Is there a Python package to convert InChi to molecular structures?

2 votes
3 answers
1k views

How to retrieve dataset names from python statsmodels?

0 votes
1 answer
1k views

How to convert mzXML to mzML format (mass spectrometry files)?

1 vote
1 answer
933 views

What is the purpose of 'Folder locations' in MaxQuant?

0 votes
2 answers
862 views

How to install genometools with anaconda?

1 vote
3 answers
826 views

How can I install bioconductor-gviz and use it in jupyter notebook?

0 votes
1 answer
751 views

Where to download a table with ICD-9-CM codes?

3 votes
1 answer
527 views

How to plot genomic.fna fasta file in R using Gviz?

2 votes
2 answers
410 views

How to use pyopenms.FeatureFindingMetabo() for peak picking in pyOpenMS?

3 votes
1 answer
398 views

How to remove frame on RDKit figures?

1 vote
1 answer
373 views

Rdkit.Chem.Draw.savefig() creates empty figures

3 votes
1 answer
362 views

Difference between genometools installed with anaconda vs apt-get?

0 votes
2 answers
272 views

How to extract date of acquisiton from mzXML and mzML files with Python?

3 votes
1 answer
236 views

How to load output from the kegg API in biopython into a pandas dataframe?

0 votes
2 answers
206 views

How to run proteowizzard on linux using wine?

1 vote
1 answer
173 views

How to export peptide-shaker data from commandline?

1 vote
0 answers
148 views

How to do protein quantification with Peptideshaker output (TMT labeled, MS2)?

1 vote
1 answer
145 views

Getting System.IO.FileNotFoundException with MaxQuant running on Linux with mono

1 vote
0 answers
138 views

How to extract certain genes including non-coding regions?

4 votes
1 answer
131 views

How to quantify similarity of genomes and find differences in set of S aureus genomes?

5 votes
1 answer
90 views

Does Prokka do six-frame translations?

3 votes
1 answer
71 views

Why does a missing label 11plex TMT shows up at almost 50% intensity compared to other labels?

2 votes
1 answer
61 views

Get a comprehensive list of virulence factors for certain or all pathogens?

1 vote
0 answers
59 views

What is the purpose of the "fixedSearchFolder" and "fixedCombinedFolder" in MaxQuant?

1 vote
1 answer
44 views

Database to download with information of bacteria?