Soren
  • Member for 3 years, 6 months
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2 answers
5 votes
3k views
How to run MaxQuant in command line mode?
4 answers
5 votes
4k views
How to create Phylogenetic Trees from fasta files in Python or R?
1 answers
5 votes
76 views
Does Prokka do six-frame translations?
1 answers
3 votes
72 views
1 bookmarks
How to load output from the kegg API in biopython into a pandas dataframe?
1 answers
3 votes
110 views
How to quantify similarity of genomes and find differences in set of S aureus genomes?
1 answers
3 votes
68 views
Why does a missing label 11plex TMT shows up at almost 50% intensity compared to other labels?
1 answers
3 votes
274 views
How to remove frame on RDKit figures?
4 answers
3 votes
4k views
Can a gff file be converted to a fasta file?
1 answers
3 votes
354 views
1 bookmarks
How to plot genomic.fna fasta file in R using Gviz?
1 answers
3 votes
238 views
Difference between genometools installed with anaconda vs apt-get?
2 answers
2 votes
192 views
How to use pyopenms.FeatureFindingMetabo() for peak picking in pyOpenMS?
0 answers
2 votes
18 views
When to use Ariba vs Roary or other genomics tools to call drug-resistance variants?
2 answers
2 votes
1k views
Is there a Python package to convert InChi to molecular structures?
1 answers
1 votes
16 views
Can Maven (mass spectrometry software) read mzML files?
2 answers
1 votes
595 views
1 bookmarks
How to retrieve dataset names from python statsmodels?
1 answers
1 votes
27 views
Getting System.IO.FileNotFoundException with MaxQuant running on Linux with mono
0 answers
1 votes
14 views
Looking for a curated large multi-target drug-receptor-interaction / toxicity dataset?
1 answers
1 votes
380 views
How to convert a SDF molecular structure file to a pandas dataframe with Python?
0 answers
1 votes
63 views
How to extract certain genes including non-coding regions?
1 answers
1 votes
13 views
2 bookmarks
What is the best way to drop alignment artifacts in sequence objects in biopython?
0 answers
1 votes
27 views
Call NCBI Multiple Sequence Alignment Viewer with target URL?
0 answers
1 votes
14 views
How to download all reactions of the TCA cycle from the RHEA database with the SPARQL endpoint?
2 answers
1 votes
2k views
Calculate molecular mass from chemical formula C9H15N4O8P with Python?
0 answers
1 votes
41 views
How to generate mgf files from Orbitrap generated MS2 proteomics raw files?
1 answers
1 votes
462 views
What is the purpose of 'Folder locations' in MaxQuant?
0 answers
1 votes
32 views
What is the purpose of the "fixedSearchFolder" and "fixedCombinedFolder" in MaxQuant?
0 answers
1 votes
16 views
Can MSstatsTMT be used for both MS2 and MS3 runs?
0 answers
1 votes
111 views
How to do protein quantification with Peptideshaker output (TMT labeled, MS2)?
1 answers
1 votes
127 views
How to export peptide-shaker data from commandline?
3 answers
1 votes
575 views
1 bookmarks
How can I install bioconductor-gviz and use it in jupyter notebook?