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  • Member for 3 years, 9 months
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5 votes

How is the GT field in a VCF file defined?

4 votes
Accepted

What should be the numbers in the fastSTRUCTURE file?

4 votes
Accepted

How to convert a BAM file into a VCF file

3 votes

what are the nodes and edges values in gene regulatory networks?

3 votes
Accepted

Question about public availability of human SNP dataset with country of origin

3 votes
Accepted

Renaming samples in vcf file

3 votes

Are variant calling files personally identifiable information?

3 votes
Accepted

Is there any database about the abundance of proteins in urine of healthy patients?

3 votes

Tutorials on phasing and imputing low-coverage sequencing data

3 votes
Accepted

Download or create VCF from Human Genome Diversity Project (HGDP)

3 votes
Accepted

How to calculate Centimorgan lengths from run lengths in one-to-one dna profile comparison

3 votes

Imputing small region of the genome

2 votes

BiocManager::install("DiffBind") mergeOne.c:341:3: note: use option -std=c99 or -std=gnu99 to compile your code

2 votes

Q: What analyses can I perform with a completely phased genome assembly?

2 votes

Where can I find the genotype frequencies for the SNP's that are tested at 23andMe, Ancestry and FTDNA/MyHeritage?

2 votes

Find overlap between VCF files

2 votes

plink: --update-name vs. editing the BIM

2 votes

Inheritance annotation for nsSNPs

2 votes

How can I subset WGS data to the level of WES variants?

2 votes

Summing up one column entries for each sample

2 votes

Interpreting imputation result from GLIMPSE

2 votes

VCF file inspector app with GUI

2 votes
Accepted

Error: "fewer tokens than expected" while using --update-name flag in plink

2 votes
Accepted

Extracting a column from a vcf file

2 votes

Low pass sequencing has been reported to detect common variants. How low can one go and get reliable data? Is 2X pass sequencing analysis possible?

2 votes
Accepted

Imputing 23andMe 3v data to v4 and v5?

1 vote
Accepted

Filtering a vcf with a text file of SNP rsIDs

1 vote

Chosing an imputation panel for SNP-Chip data?

1 vote
Accepted

Merging two dataframes in R

1 vote
Accepted

Print specific columns in a matrix on the basis of sample id's in the header