User Jay Moore

8 votes

How to run same command on multiple files?

answered Dec 11, 2018 at 12:29

8 votes

Accepted

Find intervals that genes fall within their range

answered Jun 17, 2019 at 19:04

5 votes

Accepted

Sequencing center returns data in several files

answered Sep 30, 2019 at 9:29

4 votes

Accepted

Separation of mixed plasmid DNA sequences post whole-plasmid sequencing

answered Feb 22, 2019 at 14:36

3 votes

Accepted

Combat for multiplatform batch correction

answered Feb 20, 2019 at 12:10

3 votes

Accepted

Is there any way to align ChIP-seq reads to telomeres?

answered Oct 15, 2019 at 12:39

3 votes

Accepted

Best way to "fish" long reads that match a query sequence

answered Sep 25, 2019 at 13:38

2 votes

Accepted

Getting a stretch of genomic ranges from a dataframe/granges object based on metadata column

answered Jun 14, 2019 at 14:13

2 votes

Accepted

How do I perform a pathway related grouping of genes?

answered Feb 21, 2019 at 13:05

2 votes

Loading local FASTA file in igv.js

answered Apr 29, 2019 at 13:27

2 votes

Biological replicates on Chip-seq Transcription factor data

answered Jun 24, 2019 at 22:15

2 votes

Which software is used to run Molecular Dynamics simulation of a small RNA hairpin?

answered Jan 29, 2019 at 10:55

2 votes

How can I get plant Genome size, total number of genes, EST, and chromosomes number

answered Feb 15, 2019 at 10:57

2 votes

Strategies to disentangle the effect of two genes on phenotype

answered Feb 20, 2019 at 10:28

2 votes

Do any computational phylogenetic methods enable the specification of ancestral states?

answered Jan 29, 2019 at 11:14

2 votes

How to score how densely bases are distributed along a given oligo?

answered Feb 1, 2019 at 10:39

2 votes

Accepted

RNA-seq gene/transcript read counts database for Mouse

answered Feb 8, 2019 at 11:39

2 votes

Recommendation for a binary dataset for Computational Biology open access (as in a dataset with 1 and 0 that can be used to apply ML techniques?

answered Feb 8, 2019 at 11:44

1 vote

Comparing two genome annotations

answered Jun 28, 2019 at 11:27

1 vote

Hosting IGV web on a server

answered Jul 23, 2019 at 9:25

1 vote

How to convert a .fastq chip-seq file into a wig/bigwig track and how to extract chip-seq peaks?

answered Aug 1, 2019 at 8:54

1 vote

Accepted

Correlate DEGs from DESeq2, EdgeR and Limma results

answered Aug 9, 2019 at 10:01

1 vote

Appropriate tool or algorithm for sloppy alignment of degenerate bases

answered Aug 10, 2019 at 13:40

1 vote

How to plot character state changes from a presence-absence matrix on to a phylogeny

answered Aug 12, 2019 at 11:30

1 vote

How does one construct a cladogram of intraspecies relationships?

answered Aug 21, 2019 at 14:58

1 vote

Is there a JSON-based genomic feature format?

answered Sep 13, 2019 at 11:43

1 vote

Determining the quality of a publicly available genome assembly

answered Sep 18, 2019 at 15:33

1 vote

Find most similar genes to a set of genes of interest in time series RNA-seq data

answered Sep 18, 2019 at 15:39

1 vote

Where can I find .cdf files for Affymetrix ChIP-chip data analysis?

answered Mar 5, 2019 at 13:38

1 vote

What do these files / annotations mean?

answered Oct 31, 2019 at 7:46

Stack Exchange Network

41 Answers

How to run same command on multiple files?

Find intervals that genes fall within their range

Sequencing center returns data in several files

Separation of mixed plasmid DNA sequences post whole-plasmid sequencing

Combat for multiplatform batch correction

Is there any way to align ChIP-seq reads to telomeres?

Best way to "fish" long reads that match a query sequence

Getting a stretch of genomic ranges from a dataframe/granges object based on metadata column

How do I perform a pathway related grouping of genes?

Loading local FASTA file in igv.js

Biological replicates on Chip-seq Transcription factor data

Which software is used to run Molecular Dynamics simulation of a small RNA hairpin?

How can I get plant Genome size, total number of genes, EST, and chromosomes number

Strategies to disentangle the effect of two genes on phenotype

Do any computational phylogenetic methods enable the specification of ancestral states?

How to score how densely bases are distributed along a given oligo?

RNA-seq gene/transcript read counts database for Mouse

Recommendation for a binary dataset for Computational Biology open access (as in a dataset with 1 and 0 that can be used to apply ML techniques?

Comparing two genome annotations

Hosting IGV web on a server

How to convert a .fastq chip-seq file into a wig/bigwig track and how to extract chip-seq peaks?

Correlate DEGs from DESeq2, EdgeR and Limma results

Appropriate tool or algorithm for sloppy alignment of degenerate bases

How to plot character state changes from a presence-absence matrix on to a phylogeny

How does one construct a cladogram of intraspecies relationships?

Is there a JSON-based genomic feature format?

Determining the quality of a publicly available genome assembly

Find most similar genes to a set of genes of interest in time series RNA-seq data

Where can I find .cdf files for Affymetrix ChIP-chip data analysis?

What do these files / annotations mean?