Jonathan Moore's user avatar
Jonathan Moore's user avatar
Jonathan Moore's user avatar
Jonathan Moore
  • Member for 3 years, 9 months
  • Last seen this week
1 vote

Pipeline to analyse small RNAseq and tRNAs?

1 vote

What are the standard ways to visualize protein-protein or gene-gene interactions?

1 vote

HVG and variation coefficient

1 vote
Accepted

GenomicRanges: get nearest neighbor distances for random genes using a for loop

1 vote

Method to detect genome doubling

0 votes

Common QC parameters and threshold in human WGS pipeline

-1 votes

tool to visualize a collection of phylogenetic trees

1 vote

What do these files / annotations mean?

3 votes
Accepted

Is there any way to align ChIP-seq reads to telomeres?

5 votes
Accepted

Sequencing center returns data in several files

3 votes
Accepted

Best way to "fish" long reads that match a query sequence

1 vote

Find most similar genes to a set of genes of interest in time series RNA-seq data

1 vote

Determining the quality of a publicly available genome assembly

0 votes

Find indels between two short sequences

1 vote

Is there a JSON-based genomic feature format?

1 vote

How does one construct a cladogram of intraspecies relationships?

1 vote

How to plot character state changes from a presence-absence matrix on to a phylogeny

1 vote

Appropriate tool or algorithm for sloppy alignment of degenerate bases

1 vote
Accepted

Correlate DEGs from DESeq2, EdgeR and Limma results

1 vote

How to convert a .fastq chip-seq file into a wig/bigwig track and how to extract chip-seq peaks?

1 vote

Hosting IGV web on a server

1 vote

Comparing two genome annotations

2 votes

Biological replicates on Chip-seq Transcription factor data

8 votes
Accepted

Find intervals that genes fall within their range

2 votes
Accepted

Getting a stretch of genomic ranges from a dataframe/granges object based on metadata column

0 votes

Calculating p-value for introns which are retained (or not) between 2 conditions

2 votes

Loading local FASTA file in igv.js

1 vote

Where can I find .cdf files for Affymetrix ChIP-chip data analysis?

4 votes
Accepted

Separation of mixed plasmid DNA sequences post whole-plasmid sequencing

2 votes
Accepted

How do I perform a pathway related grouping of genes?