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  • Member for 5 years, 2 months
  • Last seen more than a month ago
  • Portland, OR, United States
11 votes
Accepted

BAM to BigWig without intermediary BedGraph

9 votes
Accepted

5'UTR and 3'UTR annotation in yeast

6 votes
Accepted

How I loop over this code

6 votes
Accepted

Error in as.vector(x) : no method for coercing this S4 class to a vector

5 votes
Accepted

How can I assign a genomic region into a window using R?

5 votes
Accepted

How to interpret fish plot in R

5 votes

For what bioinformatics tasks is Biopython more adapted than Bioperl?

4 votes
Accepted

How can I specify an email address in the SLURM snakemake json configuration file?

3 votes

How to convert BED to GFF3

3 votes
Accepted

Given a Genomic Ranges of SNPs, how to inject these SNPs in genome via BSGenome?

3 votes

Finding gene length using ensembl ID

3 votes

Finding transposable elements using RepeatMasker

3 votes

How can longest isoforms (per gene) be extracted from a FASTA file?

2 votes

how to write the script to know each sample's cluster number?

2 votes

How to obtain amino acid context at a given position

2 votes
Accepted

How to download dbSNP database?

2 votes

Working with old genome builds

2 votes

RNA-seq analysis of mixed viral/host reads with salmon

2 votes
Accepted

How to visualize called narrowPeak files in UCSC Genome browser or IGV?

1 vote
Accepted

Is it normal to have a smaller bam file after merging bam files?

1 vote

Compressing the human genome to few megabytes

1 vote
Accepted

10X scRNAseq: Sample mix-up

1 vote

Mapping unique GO term description given a specific GO ids

0 votes

Is there a command line tool to split a SAM/BAM file by CB (cell barcode) tag?