User Freek - Bioinformatics Stack Exchange

Freek

Member for 4 years, 11 months
Last seen more than a month ago

myrpi.nl
NL

Network profile

12 Questions

Score Activity Newest Views

9 votes

3 answers

4k views

Running Snakemake in one single conda env

asked Jan 31, 2019 at 15:17

8 votes

3 answers

2k views

Getting the licenses of all conda installed packages

asked Feb 12, 2019 at 7:31

5 votes

1 answer

338 views

Snakemake: Migrating from deprecated cluster.json to new profiles.yaml

asked Feb 19, 2020 at 11:03

4 votes

1 answer

820 views

Making a bed file for RSeQC

asked Feb 21, 2019 at 14:54

3 votes

2 answers

5k views

'Wildcards' object has no attribute 'sample'

asked Jan 13, 2019 at 21:41

3 votes

1 answer

777 views

Python string editing in Snakemake

asked Jan 31, 2019 at 10:20

3 votes

1 answer

292 views

truncate fastq.gz file without error in Snakemake

asked Mar 31, 2020 at 14:12

2 votes

0 answers

58 views

Get SRR numbers from a GSE number

asked Aug 17 at 13:31

2 votes

1 answer

37 views

Snakemake: Re-read the samples.tsv file midway through the workflow

asked Aug 26 at 14:38

2 votes

1 answer

371 views

RSeQC provided bedfile does not work with read_distribution.py

asked Feb 8, 2019 at 14:09

1 vote

2 answers

245 views

VEP output SIFT_score unclear

asked Apr 10, 2019 at 8:17

1 vote

2 answers

710 views

Prevent Snakemake from changing wildcards: sample for every rule

asked Feb 21, 2020 at 11:57