h3ab74

Member for 2 years, 9 months

Reputation

684

684
674
664

Jan
Apr
Jul
Oct

Top tag

r

Next privilege

750 Rep.

See votes

Badges

2

12

Newest

Caucus

Next badge

0/1

Impact

0 posts edited

0 helpful flags

43 votes cast

14 Questions

Votes Activity Newest Views

1

5

votes

2

answers

1k

views

BAM to gene expression matrix (UMI counts per gene per cell),10X

bam 10x-genomics cellranger bash umi

Mar 10 at 17:49 Brunox13 131

1

3

votes

1

answer

1k

views

Running htseq-count over BAM files

rna-seq bam samtools bash

Mar 26 at 18:39 h3ab74 684

1

3

votes

2

answers

253

views

Frequency of specific viral sequence in .BAM or .fastq

alignment samtools fastq covid-19 sars-cov-2

Nov 27 at 19:24 M__ 5,723

3

votes

1

answer

960

views

Understanding PCHeatmap outputs

r scrnaseq statistics seurat pca

Mar 2 '19 at 8:26 llrs 4,542

1

3

votes

2

answers

139

views

wget for links inside html pages

ncbi

Feb 6 '19 at 16:05 M__ 5,723

2

votes

1

answer

128

views

Significant gene set testing - limma

r rna-seq statistics limma

Mar 29 '19 at 20:25 h3ab74 684

2

votes

1

answer

120

views

scRNASeq expression matrix with decimal values

r scrnaseq annotation

Feb 27 '19 at 20:15 h3ab74 684

1

vote

1

answer

56

views

REMC SNP annotations for transcriptome prediction - epiXcan

annotation snp transcriptome imputation

Dec 12 at 17:01 CommunityBot 1

1

vote

1

answer

42

views

Database of RNA-Seq and SNP genotyping data

rna-seq database snp genotyping

Apr 19 '20 at 21:08 citronrose 111

1

vote

0

answers

245

views

Running IBD using PLINK --parallel (v2)

snp plink genotyping

Dec 19 '19 at 20:03 h3ab74 684

1

vote

1

answer

389

views

Hierarchical clustering for outlier detection - single cell RNASeq & WGCNA

r scrnaseq seurat clustering wgcna

Jul 22 '19 at 21:00 Peter Langfelder 726

1

1

vote

0

answers

255

views

Normalization of single cell RNASeq data with ERCC spike-ins

r scrnaseq normalization spike-in

Jul 19 '19 at 14:10 h3ab74 684

1

vote

2

answers

569

views

GSEA - Gene Set Enrichment Analysis - in R studio

r rna-seq gsea java

May 3 '19 at 20:11 h3ab74 684

1

vote

2

answers

82

views

Using preprocessing/alignment functions on the server

rna-seq scrnaseq samtools bash

Feb 13 '19 at 15:33 M__ 5,723

Bioinformatics Stack Exchange works best with JavaScript enabled