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12 Questions

Views Newest Activity Votes

3

votes

1

answer

425

views

BAM to gene expression matrix (UMI counts per gene per cell),10X

bam 10x-genomics cellranger bash umi

Sep 26 at 22:00 user1796890 1

1

3

votes

1

answer

450

views

Running htseq-count over BAM files

rna-seq bam samtools bash

Mar 21 '19 at 20:03 h3ab74 624

3

votes

1

answer

287

views

Understanding PCHeatmap outputs

r scrnaseq statistics seurat pca

Mar 2 '19 at 8:26 llrs 4,161

1

3

votes

2

answers

116

views

wget for links inside html pages

ncbi

Feb 6 '19 at 16:05 Michael G. 2,781

2

votes

2

answers

164

views

Frequency of specific viral sequence in .BAM or .fastq

alignment samtools fastq

May 2 at 15:49 mattm 664

2

votes

1

answer

87

views

Significant gene set testing - limma

r rna-seq statistics limma

Mar 29 at 20:25 h3ab74 624

2

votes

1

answer

59

views

scRNASeq expression matrix with decimal values

r scrnaseq annotation

Feb 27 '19 at 20:15 h3ab74 624

1

vote

0

answers

30

views

Running IBD using PLINK --parallel (v2)

snp plink genotyping parallel

Dec 19 at 20:03 h3ab74 624

1

vote

1

answer

156

views

Hierarchical clustering for outlier detection - single cell RNASeq & WGCNA

r scrnaseq seurat clustering wgcna

Jul 22 at 21:00 Peter Langfelder 516

1

1

vote

0

answers

126

views

Normalization of single cell RNASeq data with ERCC spike-ins

r scrnaseq normalization spike-in

Jul 19 at 14:10 h3ab74 624

1

vote

2

answers

273

views

GSEA - Gene Set Enrichment Analysis - in R studio

r rna-seq gsea java

May 3 at 20:11 h3ab74 624

1

vote

2

answers

66

views

Using preprocessing/alignment functions on the server

rna-seq scrnaseq samtools bash

Feb 13 '19 at 15:33 Michael G. 2,781

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