User h3ab74

5 votes

2 answers

2k views

BAM to gene expression matrix (UMI counts per gene per cell),10X

asked Feb 21, 2019 at 18:57

4 votes

1 answer

1k views

Understanding PCHeatmap outputs

asked Mar 1, 2019 at 20:52

4 votes

1 answer

62 views

Co-occurrence networks in Metagenomics studies

asked Feb 10, 2022 at 18:34

3 votes

1 answer

2k views

Running htseq-count over BAM files

asked Mar 12, 2019 at 15:43

3 votes

2 answers

172 views

wget for links inside html pages

asked Feb 4, 2019 at 15:08

3 votes

2 answers

301 views

Frequency of specific viral sequence in .BAM or .fastq

asked May 2, 2019 at 14:58

2 votes

1 answer

232 views

scRNASeq expression matrix with decimal values

asked Feb 27, 2019 at 18:16

2 votes

1 answer

143 views

Significant gene set testing - limma

asked Mar 28, 2019 at 18:37

2 votes

1 answer

72 views

Extracting clusters, hierarchical clustering - bulk RNASeq

asked Jul 6, 2022 at 19:28

1 vote

0 answers

29 views

GSEA. Subsetting Gene Ontology, Biological Processes, by gene set families of interest

asked Aug 24, 2022 at 20:39

1 vote

2 answers

716 views

GSEA - Gene Set Enrichment Analysis - in R studio

asked May 2, 2019 at 1:00

1 vote

2 answers

90 views

Using preprocessing/alignment functions on the server

asked Feb 12, 2019 at 20:30

1 vote

0 answers

302 views

Normalization of single cell RNASeq data with ERCC spike-ins

asked Jul 19, 2019 at 14:10

1 vote

1 answer

478 views

Hierarchical clustering for outlier detection - single cell RNASeq & WGCNA

asked Jul 22, 2019 at 20:30

1 vote

0 answers

444 views

Running IBD using PLINK --parallel (v2)

asked Dec 19, 2019 at 20:03

1 vote

1 answer

61 views

REMC SNP annotations for transcriptome prediction - epiXcan

asked Mar 11, 2020 at 15:14

1 vote

1 answer

46 views

Database of RNA-Seq and SNP genotyping data

asked Apr 15, 2020 at 13:35

1 vote

1 answer

278 views

maxEE parameter from DADA2 package in R

asked Dec 2, 2021 at 22:00

1 vote

1 answer

446 views

Searching for adapter sequences in FASTQ files - metgenomics

asked Dec 9, 2021 at 23:02

1 vote

0 answers

98 views

Removing adapters + primers from fastq files

asked Dec 15, 2021 at 16:16

Stack Exchange Network

20 Questions

BAM to gene expression matrix (UMI counts per gene per cell),10X

Understanding PCHeatmap outputs

Co-occurrence networks in Metagenomics studies

Running htseq-count over BAM files

wget for links inside html pages

Frequency of specific viral sequence in .BAM or .fastq

scRNASeq expression matrix with decimal values

Significant gene set testing - limma

Extracting clusters, hierarchical clustering - bulk RNASeq

GSEA. Subsetting Gene Ontology, Biological Processes, by gene set families of interest

GSEA - Gene Set Enrichment Analysis - in R studio

Using preprocessing/alignment functions on the server

Normalization of single cell RNASeq data with ERCC spike-ins

Hierarchical clustering for outlier detection - single cell RNASeq & WGCNA

Running IBD using PLINK --parallel (v2)

REMC SNP annotations for transcriptome prediction - epiXcan

Database of RNA-Seq and SNP genotyping data

maxEE parameter from DADA2 package in R

Searching for adapter sequences in FASTQ files - metgenomics

Removing adapters + primers from fastq files