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h3ab74
  • Member for 5 years, 4 months
  • Last seen this week
5 votes
2 answers
3k views

BAM to gene expression matrix (UMI counts per gene per cell),10X

4 votes
1 answer
2k views

Understanding PCHeatmap outputs

4 votes
1 answer
95 views

Co-occurrence networks in Metagenomics studies

3 votes
1 answer
2k views

Running htseq-count over BAM files

3 votes
2 answers
187 views

wget for links inside html pages

3 votes
2 answers
316 views

Frequency of specific viral sequence in .BAM or .fastq

2 votes
1 answer
460 views

scRNASeq expression matrix with decimal values

2 votes
1 answer
149 views

Significant gene set testing - limma

2 votes
1 answer
231 views

Extracting clusters, hierarchical clustering - bulk RNASeq

1 vote
0 answers
48 views

GSEA. Subsetting Gene Ontology, Biological Processes, by gene set families of interest

1 vote
1 answer
286 views

Running cellranger on scRNASeq data with feature barcoding (10x + antibody capture)

1 vote
1 answer
43 views

Most-abundant isoform identification using 10x scRNASeq 5' short-reads

1 vote
2 answers
800 views

GSEA - Gene Set Enrichment Analysis - in R studio

1 vote
2 answers
97 views

Using preprocessing/alignment functions on the server

1 vote
0 answers
352 views

Normalization of single cell RNASeq data with ERCC spike-ins

1 vote
1 answer
570 views

Hierarchical clustering for outlier detection - single cell RNASeq & WGCNA

1 vote
0 answers
639 views

Running IBD using PLINK --parallel (v2)

1 vote
1 answer
66 views

REMC SNP annotations for transcriptome prediction - epiXcan

1 vote
1 answer
49 views

Database of RNA-Seq and SNP genotyping data

1 vote
1 answer
602 views

maxEE parameter from DADA2 package in R

1 vote
1 answer
1k views

Searching for adapter sequences in FASTQ files - metgenomics

1 vote
0 answers
195 views

Removing adapters + primers from fastq files