User Phoenix Mu

8 votes

Since every human has a different DNA (different combinations of C, G, A, T) what does it mean to have the genome done?

answered Mar 24, 2020 at 17:04

3 votes

Accepted

GWAS, MWAS, EWAS: what are the (in)dependent variables?

answered Mar 26, 2020 at 16:34

3 votes

Accepted

How to perform bowtie2 analysis with slurm?

answered Feb 10, 2021 at 21:35

3 votes

Accepted

how to sort and join two files based on First Column Id

answered Apr 16, 2021 at 22:00

2 votes

Making PLINK compatible files from VCF file without phenotype information

answered Feb 18, 2021 at 0:29

2 votes

Accepted

Lifting from hg38 to hg37

answered Aug 27, 2020 at 13:39

2 votes

Is there a single cell RNAseq equivalent of GTEx or TCGA?

answered Apr 30, 2020 at 13:58

2 votes

Percentage of each cluster in Seurat

answered Mar 23, 2020 at 20:00

2 votes

Accepted

Merging based on Chromosome coordinates

answered Mar 30, 2020 at 13:56

2 votes

merging two/or more bed file into one bed file

answered Apr 4, 2020 at 15:17

2 votes

What RNA-Seq expression value would be closest to Microarray equivalent?

answered Apr 9, 2020 at 14:32

1 vote

Accepted

How to download RNAseq gene expression data from GTEx

answered Apr 11, 2020 at 15:15

1 vote

Calculating the number of probes for a given genomic range

answered Apr 3, 2020 at 1:41

1 vote

Generate VCF from different .bam files with different chromosome names

answered Mar 23, 2020 at 22:54

1 vote

How do I differentiate outliers from in-group variations in a DESeq2 PCA plot of 9 samples distributed into 3 conditions?

answered Mar 23, 2020 at 18:49

1 vote

What are the largest fully publicly available molecular QTL datasets?

answered Mar 23, 2020 at 18:52

1 vote

Accepted

How to identify latent variables in single-cell RNA-Seq data

answered Mar 23, 2020 at 19:09

1 vote

How to decide number of neighbors and resolution for Louvain clustering

answered Mar 28, 2020 at 22:25

1 vote

Accepted

How can I download the SNP genotyping information from GTEX?

answered Mar 29, 2020 at 19:59

1 vote

What is the difference between fixed effects and random effects in the context of Linear-mixed models?

answered Mar 24, 2020 at 17:12

1 vote

differential analysis of chip-seq data

answered Jun 16, 2020 at 21:30

1 vote

What are the state-of-the-art cell-type RNA-Seq deconvolution methods?

answered Jun 23, 2020 at 21:14

1 vote

Should you filter GWAS hits with high standard error?

answered May 12, 2020 at 13:50

1 vote

Hypergeometic test for the overlap of two set of genomic intervals (e.g. from Chip-seq data)

answered May 15, 2020 at 22:57

1 vote

snakemake - using output file not explicitly declared as input for subsequent rule

answered May 27, 2020 at 13:25

1 vote

Advantages of paired-end sequencing compared to single end

answered Sep 21, 2020 at 0:16

1 vote

Biology behind PCA analysis based on SNP

answered Dec 18, 2020 at 23:25

1 vote

How can I obtain a list of all NCBI gene ID's along with their full name, symbol, and also known as symbols?

answered Jun 29, 2020 at 13:25

1 vote

Multiple box plot

answered Feb 12, 2021 at 3:20

1 vote

Is there a way to do GWAS on phenotype data that is not normally distributed?

answered Feb 15, 2021 at 16:38

Stack Exchange Network

46 Answers

Since every human has a different DNA (different combinations of C, G, A, T) what does it mean to have the genome done?

GWAS, MWAS, EWAS: what are the (in)dependent variables?

How to perform bowtie2 analysis with slurm?

how to sort and join two files based on First Column Id

Making PLINK compatible files from VCF file without phenotype information

Lifting from hg38 to hg37

Is there a single cell RNAseq equivalent of GTEx or TCGA?

Percentage of each cluster in Seurat

Merging based on Chromosome coordinates

merging two/or more bed file into one bed file

What RNA-Seq expression value would be closest to Microarray equivalent?

How to download RNAseq gene expression data from GTEx

Calculating the number of probes for a given genomic range

Generate VCF from different .bam files with different chromosome names

How do I differentiate outliers from in-group variations in a DESeq2 PCA plot of 9 samples distributed into 3 conditions?

What are the largest fully publicly available molecular QTL datasets?

How to identify latent variables in single-cell RNA-Seq data

How to decide number of neighbors and resolution for Louvain clustering

How can I download the SNP genotyping information from GTEX?

What is the difference between fixed effects and random effects in the context of Linear-mixed models?

differential analysis of chip-seq data

What are the state-of-the-art cell-type RNA-Seq deconvolution methods?

Should you filter GWAS hits with high standard error?

Hypergeometic test for the overlap of two set of genomic intervals (e.g. from Chip-seq data)

snakemake - using output file not explicitly declared as input for subsequent rule

Advantages of paired-end sequencing compared to single end

Biology behind PCA analysis based on SNP

How can I obtain a list of all NCBI gene ID's along with their full name, symbol, and also known as symbols?

Multiple box plot

Is there a way to do GWAS on phenotype data that is not normally distributed?