User PPK

6 votes

Accepted

What is the name of this type of figure?

answered Aug 2, 2019 at 8:55

5 votes

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TCR-seq or scRNA-seq

answered Aug 4, 2021 at 11:52

4 votes

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How to incorportate RIN values as covariate in the design matrix?

answered May 20, 2020 at 12:09

3 votes

Accepted

How to specifically select cluster on Featurescatter on Seurat?

answered May 20, 2020 at 12:36

3 votes

Accepted

When should I apply a multiple comparison adjustment?

answered May 13, 2020 at 16:36

2 votes

Extract end position from CIGAR

answered Apr 17, 2020 at 11:35

2 votes

Adding certain barcodes to metadata in Seurat

answered Apr 21, 2020 at 15:21

2 votes

how to merge more than two sample in Seurat?

answered Aug 19, 2019 at 13:26

2 votes

Low custom tdtomato gene content

answered Jul 16, 2019 at 12:07

2 votes

How do I select a proper design matrix to use in DRIMSeq?

answered Jul 25, 2019 at 17:41

2 votes

How to retrieve the subcellular location info from uniprot?

answered Jul 30, 2019 at 15:42

2 votes

How identifiable are human omics data and how to mitigate their identifying features?

answered Jul 21, 2020 at 10:43

2 votes

Accepted

Converting aligned fasta to plink ped/bed

answered Jul 29, 2020 at 12:04

2 votes

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Cellranger results have too many cells

answered Aug 23, 2022 at 18:15

2 votes

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Calculating average mito.percentage for each cluster (seurat)

answered Oct 26, 2020 at 15:27

2 votes

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chipseeker annotation issue

answered Dec 2, 2020 at 10:18

2 votes

Voom function from limma package and Normalization on counts data

answered Jun 25, 2021 at 15:21

2 votes

umap and Louvain clustering on normalized data

answered May 12, 2020 at 9:06

1 vote

Which format is the most raw format

answered Jun 1, 2021 at 8:08

1 vote

Long-form gene summary

answered Jun 1, 2021 at 13:32

1 vote

Are sequencing reads written differently when inserts and indexes are sequenced seperately?

answered Nov 4, 2020 at 16:16

1 vote

Seurat DE t.test

answered Jul 29, 2020 at 14:53

1 vote

Identification of starting point for the synthesis of a protein

answered Jul 30, 2020 at 10:59

1 vote

Within and between sample count normalization

answered Aug 10, 2020 at 9:07

1 vote

can I download DESeq2 in R 3.6.3 in Linux MInt?

answered Jul 24, 2020 at 15:40

1 vote

Accepted

Best practice to perform a functional analysis on a set of VCFs from a cohort of patients

answered May 15, 2020 at 13:35

0 votes

Gene information from chromosome location

answered Apr 29, 2020 at 10:22

0 votes

Accepted

After running a DRIMSeq pipeline, how do I know which genes are upregulated in the different conditions?

answered Aug 19, 2019 at 15:00

0 votes

What is a good RNA seq normalization method that allows for across sample comparisons and between transcripts

answered Jul 9, 2021 at 10:01

-1 votes

Accepted

High percentage of poly A sequences in 10X chromium R2 read

answered Jun 28, 2021 at 13:48

Stack Exchange Network

30 Answers

What is the name of this type of figure?

TCR-seq or scRNA-seq

How to incorportate RIN values as covariate in the design matrix?

How to specifically select cluster on Featurescatter on Seurat?

When should I apply a multiple comparison adjustment?

Extract end position from CIGAR

Adding certain barcodes to metadata in Seurat

how to merge more than two sample in Seurat?

Low custom tdtomato gene content

How do I select a proper design matrix to use in DRIMSeq?

How to retrieve the subcellular location info from uniprot?

How identifiable are human omics data and how to mitigate their identifying features?

Converting aligned fasta to plink ped/bed

Cellranger results have too many cells

Calculating average mito.percentage for each cluster (seurat)

chipseeker annotation issue

Voom function from limma package and Normalization on counts data

umap and Louvain clustering on normalized data

Which format is the most raw format

Long-form gene summary

Are sequencing reads written differently when inserts and indexes are sequenced seperately?

Seurat DE t.test

Identification of starting point for the synthesis of a protein

Within and between sample count normalization

can I download DESeq2 in R 3.6.3 in Linux MInt?

Best practice to perform a functional analysis on a set of VCFs from a cohort of patients

Gene information from chromosome location

After running a DRIMSeq pipeline, how do I know which genes are upregulated in the different conditions?

What is a good RNA seq normalization method that allows for across sample comparisons and between transcripts

High percentage of poly A sequences in 10X chromium R2 read