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Kamil S Jaron's user avatar
Kamil S Jaron's user avatar
Kamil S Jaron's user avatar
Kamil S Jaron
  • Member for 7 years, 1 month
  • Last seen more than a week ago
31 votes
Accepted

Why do some assemblers require an odd-length kmer for the construction of de Bruijn graphs?

19 votes
Accepted

Converting a BAM file into VCF

18 votes
Accepted

Why Bioconductor?

16 votes
Accepted

What reasons are there to choose Illumina if PacBio provides longer and better reads?

13 votes
Accepted

Volcano plot in R

12 votes
Accepted

Index a BAM file using pysam

9 votes

How to detect a mutation and predict its consequence?

9 votes
Accepted

Aligning many long sequences

8 votes
Accepted

Where can I find a database that has phenotype information together with associated SNPs?

7 votes

Remove/delete sequences by ID from multifasta

6 votes
Accepted

Is there an easy way to create a summary of a VCF file (v4.1) with structural variations?

6 votes

How to identify the DNA sequence of a gene in the complete genome sequence FASTA format file?

5 votes
Accepted

Can I submit a R package to Bioconductor or CRAN if I have already published it a journal?

5 votes

QC measures for NGS sequencing

5 votes

Given a VCF of a human genome, how do I assess the quality against known SNVs?

5 votes

Formula for k-mer coverage

5 votes

How to find the sum of all sequences in a multifasta file

5 votes

How to enlarge a section of y-axis?

5 votes

Is there a standard definition for "assembly polishing"?

5 votes
Accepted

estimate genome size: kmer-based approach from PacBio reads

4 votes
Accepted

How can I find out the code DRIMSeq uses to make dmplotProportions objects?

4 votes

Uppercase vs lowercase letters in reference genome

4 votes
Accepted

What are the advantages and disadvantages between using KEGG or Reactome?

4 votes

How to simulate NGS reads, controlling sequence coverage?

4 votes

mapping heteryzygous kmers on a genome

4 votes

Calling for one specific SNP from multiple sequencing runs

3 votes

Annotatation of transposable elements / transposons / SINE sequences in human

3 votes

fastq file format unknown

3 votes
Accepted

Why do we count reverse compliments when counting kmers in a single DNA strand?

3 votes

Splitting data table up based on separate file of gene names