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heathobrien

I am a genome scientist using functional genomics to understand the genetic basis of disease. I code in R, Python and occasionally SQL.

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9 How to resolve in snakemake error : “Target rules may not contain wildcards.” Nov 3 '17
8 Biopython Phylogenetic Tree replace branch tip labels by sequence logos May 22 '18
8 How to download the whole BLAST nt database into a specific folder? Jan 8 '18
7 Script to run everything in a loop for extracting tar.gz files into fastq and to bam with alignment? Apr 23 '18
7 What happens if a major bug is discovered in a bioinformatic package that has been used in published literature? Nov 14 '17
6 BioMart returns one more item Apr 16 '18
5 Generating the reconstructed alignment from BAM Mar 1 '18
5 Software recommendation: find DNA sequence distribution over entire transcript Sep 26 '17
4 Counting letters in phylip alignment columns with Biopython Aug 29 '18
4 size of the pathways for analysis and filtration Jul 12 '18
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