User heathobrien

9 votes

Accepted

How to resolve in snakemake error : "Target rules may not contain wildcards."

answered Nov 3, 2017 at 12:49

8 votes

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How to download the whole BLAST nt database into a specific folder?

answered Jan 8, 2018 at 12:21

8 votes

Accepted

Biopython Phylogenetic Tree replace branch tip labels by sequence logos

answered May 22, 2018 at 9:29

7 votes

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Script to run everything in a loop for extracting tar.gz files into fastq and to bam with alignment?

answered Apr 23, 2018 at 9:33

7 votes

What happens if a major bug is discovered in a bioinformatic package that has been used in published literature?

answered Nov 14, 2017 at 12:39

6 votes

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BioMart returns one more item

answered Apr 16, 2018 at 20:28

5 votes

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Generating the reconstructed alignment from BAM

answered Mar 1, 2018 at 18:42

5 votes

Accepted

Software recommendation: find DNA sequence distribution over entire transcript

answered Sep 26, 2017 at 11:49

4 votes

Accepted

Installing Sibelia for Ragout on Mac OSX

answered Sep 28, 2017 at 14:47

4 votes

Convert population allele count into population allele frequency by using Perl or Python (translate available Bash into Perl or Python)

answered Nov 7, 2017 at 16:01

4 votes

Matlab scatter diagram

answered Nov 13, 2017 at 12:55

4 votes

Transferring genomic features on new coordinates

answered Nov 22, 2017 at 11:42

4 votes

Accepted

knnImputation for missing data

answered Jan 20, 2018 at 10:39

4 votes

size of the pathways for analysis and filtration

answered Jul 12, 2018 at 15:12

4 votes

Counting letters in phylip alignment columns with Biopython

answered Aug 29, 2018 at 21:22

3 votes

Smallest group size for differential expression in limma (bulk RNA-Seq)

answered May 24, 2018 at 16:07

3 votes

Why Ti/Tv ratio?

answered May 25, 2018 at 15:01

3 votes

Accepted

Preparing data for UpSet Plot in R

answered May 30, 2018 at 14:56

3 votes

Accepted

How to install blasr on Mac OS X?

answered Jan 25, 2018 at 16:27

3 votes

Retrieve abstract/summary for NCBI bookshelf via Entrez

answered Nov 1, 2017 at 14:54

3 votes

Difference between de novo transcriptome assembly methods

answered Jan 3, 2018 at 16:06

3 votes

How to isolate genes from whole genomes for phylogenetic tree analysis?

answered Jul 5, 2017 at 14:50

2 votes

Accepted

blasting a refseq protein does not show the protein in the result set

answered Jul 25, 2017 at 11:27

2 votes

What are the differences between GWAS and QTL mapping?

answered Dec 11, 2017 at 15:24

2 votes

Accepted

Splitting characters of a column in repeated lines and reducing them to one line

answered Jan 18, 2018 at 12:52

2 votes

Two variants associated with same chromosomal position in genotype data for one individual

answered Mar 13, 2018 at 14:10

2 votes

Accepted

Is it OK to use Blast+ to query NCBI's 16s rRNA database with 16s DNA sequences?

answered Apr 9, 2018 at 9:21

2 votes

Information about control data

answered Apr 16, 2018 at 10:28

2 votes

Deseq2 output issue

answered Apr 18, 2018 at 11:04

2 votes

Accepted

Obtaining identifier from plot of sequence GC%

answered Apr 20, 2018 at 8:05

Stack Exchange Network

46 Answers

How to resolve in snakemake error : "Target rules may not contain wildcards."

How to download the whole BLAST nt database into a specific folder?

Biopython Phylogenetic Tree replace branch tip labels by sequence logos

Script to run everything in a loop for extracting tar.gz files into fastq and to bam with alignment?

What happens if a major bug is discovered in a bioinformatic package that has been used in published literature?

BioMart returns one more item

Generating the reconstructed alignment from BAM

Software recommendation: find DNA sequence distribution over entire transcript

Installing Sibelia for Ragout on Mac OSX

Convert population allele count into population allele frequency by using Perl or Python (translate available Bash into Perl or Python)

Matlab scatter diagram

Transferring genomic features on new coordinates

knnImputation for missing data

size of the pathways for analysis and filtration

Counting letters in phylip alignment columns with Biopython

Smallest group size for differential expression in limma (bulk RNA-Seq)

Why Ti/Tv ratio?

Preparing data for UpSet Plot in R

How to install blasr on Mac OS X?

Retrieve abstract/summary for NCBI bookshelf via Entrez

Difference between de novo transcriptome assembly methods

How to isolate genes from whole genomes for phylogenetic tree analysis?

blasting a refseq protein does not show the protein in the result set

What are the differences between GWAS and QTL mapping?

Splitting characters of a column in repeated lines and reducing them to one line

Two variants associated with same chromosomal position in genotype data for one individual

Is it OK to use Blast+ to query NCBI's 16s rRNA database with 16s DNA sequences?

Information about control data

Deseq2 output issue

Obtaining identifier from plot of sequence GC%