User heathobrien

4 votes

Counting letters in phylip alignment columns with Biopython

answered Aug 29, 2018 at 21:22

2 votes

To find p-value of compounds (pairwise)

answered Jul 23, 2018 at 16:02

1 vote

Annotation with Prokka or RAST

answered Jul 21, 2018 at 9:13

4 votes

size of the pathways for analysis and filtration

answered Jul 12, 2018 at 15:12

2 votes

Accepted

Odds ratio calculations in GWAS paper

answered Jul 11, 2018 at 23:38

2 votes

Bioinformatics approach to dentifing potential PCR primer sequences for transcribed gene

answered Jul 10, 2018 at 14:23

3 votes

Accepted

Preparing data for UpSet Plot in R

answered May 30, 2018 at 14:56

3 votes

Why Ti/Tv ratio?

answered May 25, 2018 at 15:01

3 votes

Smallest group size for differential expression in limma (bulk RNA-Seq)

answered May 24, 2018 at 16:07

8 votes

Accepted

Biopython Phylogenetic Tree replace branch tip labels by sequence logos

answered May 22, 2018 at 9:29

1 vote

how to do analysis of a table content SNP?

answered May 18, 2018 at 11:20

7 votes

Accepted

Script to run everything in a loop for extracting tar.gz files into fastq and to bam with alignment?

answered Apr 23, 2018 at 9:33

0 votes

Generating multiple NCBI URLs with eutils

answered Apr 27, 2018 at 11:35

2 votes

Accepted

Obtaining identifier from plot of sequence GC%

answered Apr 20, 2018 at 8:05

2 votes

Deseq2 output issue

answered Apr 18, 2018 at 11:04

2 votes

Information about control data

answered Apr 16, 2018 at 10:28

6 votes

Accepted

BioMart returns one more item

answered Apr 16, 2018 at 20:28

2 votes

Accepted

Is it OK to use Blast+ to query NCBI's 16s rRNA database with 16s DNA sequences?

answered Apr 9, 2018 at 9:21

2 votes

Two variants associated with same chromosomal position in genotype data for one individual

answered Mar 13, 2018 at 14:10

5 votes

Accepted

Generating the reconstructed alignment from BAM

answered Mar 1, 2018 at 18:42

1 vote

What does it mean to over sample?

answered Feb 22, 2018 at 16:48

1 vote

seqret: Warning: bad /protein_id value

answered Feb 20, 2018 at 16:52

1 vote

How do I get the gene order from genbank file using gene names?

answered Feb 6, 2018 at 19:16

3 votes

Accepted

How to install blasr on Mac OS X?

answered Jan 25, 2018 at 16:27

1 vote

What is the standard way to work with a diploid reference genome? Complementary strands?

answered Jan 25, 2018 at 12:41

4 votes

Accepted

knnImputation for missing data

answered Jan 20, 2018 at 10:39

2 votes

Accepted

Splitting characters of a column in repeated lines and reducing them to one line

answered Jan 18, 2018 at 12:52

9 votes

Accepted

How to download the whole BLAST nt database into a specific folder?

answered Jan 8, 2018 at 12:21

3 votes

Difference between de novo transcriptome assembly methods

answered Jan 3, 2018 at 16:06

1 vote

Accepted

how to count the number of each allele of CNVs?

answered Jan 3, 2018 at 10:28

Stack Exchange Network

46 Answers

Counting letters in phylip alignment columns with Biopython

To find p-value of compounds (pairwise)

Annotation with Prokka or RAST

size of the pathways for analysis and filtration

Odds ratio calculations in GWAS paper

Bioinformatics approach to dentifing potential PCR primer sequences for transcribed gene

Preparing data for UpSet Plot in R

Why Ti/Tv ratio?

Smallest group size for differential expression in limma (bulk RNA-Seq)

Biopython Phylogenetic Tree replace branch tip labels by sequence logos

how to do analysis of a table content SNP?

Script to run everything in a loop for extracting tar.gz files into fastq and to bam with alignment?

Generating multiple NCBI URLs with eutils

Obtaining identifier from plot of sequence GC%

Deseq2 output issue

Information about control data

BioMart returns one more item

Is it OK to use Blast+ to query NCBI's 16s rRNA database with 16s DNA sequences?

Two variants associated with same chromosomal position in genotype data for one individual

Generating the reconstructed alignment from BAM

What does it mean to over sample?

seqret: Warning: bad /protein_id value

How do I get the gene order from genbank file using gene names?

How to install blasr on Mac OS X?

What is the standard way to work with a diploid reference genome? Complementary strands?

knnImputation for missing data

Splitting characters of a column in repeated lines and reducing them to one line

How to download the whole BLAST nt database into a specific folder?

Difference between de novo transcriptome assembly methods

how to count the number of each allele of CNVs?