User 0x90

11 votes

1 answer

963 views

How to read and interpret a gene expression quantification file?

asked Jun 8, 2017 at 2:25

10 votes

4 answers

873 views

How can I build a protein network pathway from a gene expression quantification file?

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10 votes

2 answers

831 views

How to import a large amount of .bed, .gff, .vcf, .paf, .sam files into an SQL database?

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8 votes

3 answers

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How to detect a mutation and predict its consequence?

asked Jun 10, 2017 at 23:27

5 votes

4 answers

280 views

How do you query and explore ENCODE data?

asked Jan 18, 2019 at 14:49

4 votes

4 answers

159 views

What are the standard ways to visualize protein-protein or gene-gene interactions?

asked Jun 12, 2017 at 6:08

4 votes

1 answer

241 views

How are PDO and PDX used in computational and predicative models for tumour biology?

asked Jun 22, 2017 at 18:05

4 votes

1 answer

148 views

Are there computational tools to extract features of DNA sequences?

asked Oct 22, 2020 at 4:10

3 votes

2 answers

1k views

How does DeepVariant construct RGB images from DNA sequences?

asked Aug 19, 2020 at 13:53

3 votes

0 answers

77 views

Is there a baby Hello World example using BIGstack?

asked Dec 26, 2020 at 17:54

3 votes

2 answers

950 views

How do you download stuff from NCBI fast? [duplicate]

asked Apr 24, 2019 at 0:19

3 votes

2 answers

844 views

Does this FASTQ data contain single or paired end calls?

asked Sep 10, 2019 at 14:43

3 votes

1 answer

42 views

How does Cellminer's "Cross-correlations of transcripts, drugs, and microRNAs" work

asked Jun 10, 2017 at 20:24

3 votes

2 answers

105 views

EMT/EMT-like processes in bioinformatics to study cancer progression

asked Nov 21, 2017 at 17:16

3 votes

2 answers

373 views

How to find/build the evolutionary history of a protein from its sequence?

asked Jan 23, 2018 at 15:32

3 votes

1 answer

344 views

How to simulate biological pathways?

asked Jan 29, 2018 at 0:16

3 votes

1 answer

270 views

How to assess the quality of assembled .fasta genome files?

asked Jul 31, 2018 at 4:56

3 votes

5 answers

7k views

How to create a .bed file from .fasta? [duplicate]

asked Nov 14, 2018 at 0:44

3 votes

0 answers

57 views

How to access XL-MS raw data and databases?

asked Apr 15, 2021 at 11:40

3 votes

1 answer

56 views

How to optimize the number of amplicons ordered for a PCR wet experiment with several genomic ROIs?

asked Sep 22, 2021 at 14:23

3 votes

0 answers

78 views

How to use hgvs to project a variant list on a given protein sequence string?

asked Jul 29, 2022 at 9:12

2 votes

1 answer

164 views

Are there open-sourced graph-based variant callers?

asked Feb 9, 2021 at 8:09

2 votes

0 answers

97 views

How to analyze and visualize CRISPR-CAS9 screening results?

asked Jan 13, 2019 at 17:08

2 votes

2 answers

72 views

Using data mining of papers in order to derive genomic connections [closed]

asked Jul 9, 2017 at 21:31

2 votes

0 answers

31 views

Working with the additional cell lines in NCI-60

asked Jul 20, 2017 at 12:38

2 votes

1 answer

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Are there genomics databases for neurological and psychiatric disorders?

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2 votes

0 answers

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How to get the GO information for all the human genes?

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2 votes

2 answers

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How do you visualize minimap2's PAF output format?

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2 votes

2 answers

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How to get the genomic sequences from a blat result?

asked Sep 3, 2020 at 16:01

1 vote

1 answer

874 views

How to predict with the pre-trained DNABERT model?

asked Nov 10, 2020 at 1:26

Stack Exchange Network

44 Questions

How to read and interpret a gene expression quantification file?

How can I build a protein network pathway from a gene expression quantification file?

How to import a large amount of .bed, .gff, .vcf, .paf, .sam files into an SQL database?

How to detect a mutation and predict its consequence?

How do you query and explore ENCODE data?

What are the standard ways to visualize protein-protein or gene-gene interactions?

How are PDO and PDX used in computational and predicative models for tumour biology?

Are there computational tools to extract features of DNA sequences?

How does DeepVariant construct RGB images from DNA sequences?

Is there a baby Hello World example using BIGstack?

How do you download stuff from NCBI fast? [duplicate]

Does this FASTQ data contain single or paired end calls?

How does Cellminer's "Cross-correlations of transcripts, drugs, and microRNAs" work

EMT/EMT-like processes in bioinformatics to study cancer progression

How to find/build the evolutionary history of a protein from its sequence?

How to simulate biological pathways?

How to assess the quality of assembled .fasta genome files?

How to create a .bed file from .fasta? [duplicate]

How to access XL-MS raw data and databases?

How to optimize the number of amplicons ordered for a PCR wet experiment with several genomic ROIs?

How to use hgvs to project a variant list on a given protein sequence string?

Are there open-sourced graph-based variant callers?

How to analyze and visualize CRISPR-CAS9 screening results?

Using data mining of papers in order to derive genomic connections [closed]

Working with the additional cell lines in NCI-60

Are there genomics databases for neurological and psychiatric disorders?

How to get the GO information for all the human genes?

How do you visualize minimap2's PAF output format?

How to get the genomic sequences from a blat result?

How to predict with the pre-trained DNABERT model?