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0x90
  • Member for 6 years, 10 months
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3 votes
0 answers
74 views

Is there a baby Hello World example using BIGstack?

1 vote
1 answer
86 views

What datasets are available out there for prediction based on DNA sequences? [closed]

3 votes
2 answers
345 views

How to find/build the evolutionary history of a protein from its sequence?

9 votes
2 answers
759 views

How to import a large amount of .bed, .gff, .vcf, .paf, .sam files into an SQL database?

3 votes
0 answers
70 views

How to use hgvs to project a variant list on a given protein sequence string?

2 votes
2 answers
4k views

How do you visualize minimap2's PAF output format?

3 votes
1 answer
55 views

How to optimize the number of amplicons ordered for a PCR wet experiment with several genomic ROIs?

3 votes
5 answers
7k views

How to create a .bed file from .fasta? [duplicate]

0 votes
2 answers
91 views

CRISPR screening and systems biology

4 votes
1 answer
146 views

Are there computational tools to extract features of DNA sequences?

3 votes
0 answers
55 views

How to access XL-MS raw data and databases?

0 votes
1 answer
79 views

How to compute a p-value for the similarity measurement of two DNA sequences/contigs?

2 votes
1 answer
156 views

Are there open-sourced graph-based variant callers?

8 votes
3 answers
288 views

How to detect a mutation and predict its consequence?

3 votes
2 answers
974 views

How does DeepVariant construct RGB images from DNA sequences?

1 vote
1 answer
458 views

What would be a reasonable healthy data set/control group to compare with a cell line from TCGA?

1 vote
1 answer
815 views

How to predict with the pre-trained DNABERT model?

2 votes
2 answers
207 views

How to get the genomic sequences from a blat result?

0 votes
1 answer
286 views

Does NCBI's blast API block my IP?

5 votes
4 answers
277 views

How do you query and explore ENCODE data?

0 votes
1 answer
141 views

How to represent pathways as mathematical graphs?

2 votes
0 answers
301 views

How to get the GO information for all the human genes?

3 votes
1 answer
339 views

How to simulate biological pathways?

4 votes
1 answer
239 views

How are PDO and PDX used in computational and predicative models for tumour biology?

2 votes
1 answer
87 views

Are there genomics databases for neurological and psychiatric disorders?

4 votes
4 answers
157 views

What are the standard ways to visualize protein-protein or gene-gene interactions?

1 vote
1 answer
45 views

Are there databases or resources that contain expression of proteins or genes before and after cancer treatment?

3 votes
2 answers
780 views

Does this FASTQ data contain single or paired end calls?

3 votes
1 answer
264 views

How to assess the quality of assembled .fasta genome files?

0 votes
1 answer
1k views

How to convert a .fastq chip-seq file into a wig/bigwig track and how to extract chip-seq peaks?