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0x90
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3 votes
0 answers
69 views

How to use hgvs to project a variant list on a given protein sequence string?

3 votes
1 answer
53 views

How to optimize the number of amplicons ordered for a PCR wet experiment with several genomic ROIs?

0 votes
1 answer
79 views

How to compute a p-value for the similarity measurement of two DNA sequences/contigs?

3 votes
0 answers
55 views

How to access XL-MS raw data and databases?

2 votes
1 answer
155 views

Are there open-sourced graph-based variant callers?

9 votes
2 answers
752 views

How to import a large amount of .bed, .gff, .vcf, .paf, .sam files into an SQL database?

3 votes
0 answers
74 views

Is there a baby Hello World example using BIGstack?

1 vote
1 answer
86 views

What datasets are available out there for prediction based on DNA sequences? [closed]

2 votes
2 answers
4k views

How do you visualize minimap2's PAF output format?

1 vote
1 answer
803 views

How to predict with the pre-trained DNABERT model?

4 votes
1 answer
146 views

Are there computational tools to extract features of DNA sequences?

0 votes
1 answer
283 views

Does NCBI's blast API block my IP?

2 votes
2 answers
205 views

How to get the genomic sequences from a blat result?

3 votes
2 answers
958 views

How does DeepVariant construct RGB images from DNA sequences?

2 votes
0 answers
295 views

How to get the GO information for all the human genes?

0 votes
1 answer
141 views

How to represent pathways as mathematical graphs?

0 votes
2 answers
91 views

CRISPR screening and systems biology

2 votes
1 answer
87 views

Are there genomics databases for neurological and psychiatric disorders?

1 vote
1 answer
45 views

Are there databases or resources that contain expression of proteins or genes before and after cancer treatment?

3 votes
2 answers
774 views

Does this FASTQ data contain single or paired end calls?

0 votes
1 answer
1k views

How to convert a .fastq chip-seq file into a wig/bigwig track and how to extract chip-seq peaks?

3 votes
2 answers
869 views

How do you download stuff from NCBI fast? [duplicate]

1 vote
2 answers
106 views

Is there a tool to convert a variableStep .wig to fixedStep one?

1 vote
1 answer
129 views

How to convert ChiP-seq track in .bam file format into an array at fixed bin resolution?

0 votes
2 answers
550 views

How to cluster the human genes by pathways/system-biology/metabolic properties?

5 votes
4 answers
277 views

How do you query and explore ENCODE data?

2 votes
0 answers
96 views

How to analyze and visualize CRISPR-CAS9 screening results?

3 votes
5 answers
7k views

How to create a .bed file from .fasta? [duplicate]

3 votes
1 answer
263 views

How to assess the quality of assembled .fasta genome files?

3 votes
1 answer
338 views

How to simulate biological pathways?