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0x90
  • Member for 6 years, 10 months
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3 votes
5 answers
7k views

How to create a .bed file from .fasta? [duplicate]

2 votes
2 answers
4k views

How do you visualize minimap2's PAF output format?

0 votes
1 answer
1k views

How to convert a .fastq chip-seq file into a wig/bigwig track and how to extract chip-seq peaks?

3 votes
2 answers
974 views

How does DeepVariant construct RGB images from DNA sequences?

11 votes
1 answer
957 views

How to read and interpret a gene expression quantification file?

3 votes
2 answers
879 views

How do you download stuff from NCBI fast? [duplicate]

10 votes
4 answers
863 views

How can I build a protein network pathway from a gene expression quantification file?

1 vote
1 answer
815 views

How to predict with the pre-trained DNABERT model?

3 votes
2 answers
780 views

Does this FASTQ data contain single or paired end calls?

9 votes
2 answers
759 views

How to import a large amount of .bed, .gff, .vcf, .paf, .sam files into an SQL database?

0 votes
2 answers
556 views

How to cluster the human genes by pathways/system-biology/metabolic properties?

1 vote
1 answer
458 views

What would be a reasonable healthy data set/control group to compare with a cell line from TCGA?

3 votes
2 answers
345 views

How to find/build the evolutionary history of a protein from its sequence?

3 votes
1 answer
339 views

How to simulate biological pathways?

2 votes
0 answers
301 views

How to get the GO information for all the human genes?

8 votes
3 answers
288 views

How to detect a mutation and predict its consequence?

0 votes
1 answer
286 views

Does NCBI's blast API block my IP?

5 votes
4 answers
277 views

How do you query and explore ENCODE data?

3 votes
1 answer
264 views

How to assess the quality of assembled .fasta genome files?

4 votes
1 answer
239 views

How are PDO and PDX used in computational and predicative models for tumour biology?

2 votes
2 answers
207 views

How to get the genomic sequences from a blat result?

4 votes
4 answers
157 views

What are the standard ways to visualize protein-protein or gene-gene interactions?

2 votes
1 answer
156 views

Are there open-sourced graph-based variant callers?

4 votes
1 answer
146 views

Are there computational tools to extract features of DNA sequences?

0 votes
1 answer
141 views

How to represent pathways as mathematical graphs?

1 vote
1 answer
129 views

How to convert ChiP-seq track in .bam file format into an array at fixed bin resolution?

0 votes
2 answers
117 views

How can I find the relevant pathway map from gene-gene or protein-protein interaction list? [closed]

1 vote
2 answers
106 views

Is there a tool to convert a variableStep .wig to fixedStep one?

3 votes
2 answers
105 views

EMT/EMT-like processes in bioinformatics to study cancer progression

2 votes
0 answers
96 views

How to analyze and visualize CRISPR-CAS9 screening results?