Bioinformatics Beta
Devon Ryan
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About

Bioinformatician and data manager at the Max Planck Institute for Immunobiology and Epigenetics in Freiburg.

My background is human neurogenetics and ion channel biophysics...with a fair bit of programming as needed.

I'm one of the administrators on biostars and a moderator on the bioinformatics stackexchange.

I'm the developer of MethylDackel and pyBigWig, among others. I'm also one of the developers behind deepTools.

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23 What is the fastest way to get the reverse complement of a DNA sequence in python? Feb 20 '18
23 Convert a BAM file from one reference to another? May 16 '17
18 What is the fastest way to calculate the number of unknown nucleotides in FASTA / FASTQ files? Jun 1 '17
17 Why would someone use a CRAM instead of a BAM? Feb 26 '18
15 How exactly is "effective length" used in FPKM calculated? Jun 1 '17
15 Are soft-clipped bases used for variant calling in samtools + bcftools? May 19 '17
14 Understanding DESeq2 design, contrast and results May 19 '17
14 Merge hundreds of small BAM files into a single BAM file May 19 '17
13 Can open-source software be peer-reviewed and published? Feb 5 '20
13 Using the t-SNE algorithm on microarray data + an error bonus Sep 4 '17
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