User benn

11 votes

How do I generate a color-coded tanglegram?

answered Jun 27, 2017 at 12:30

10 votes

Least present k-mers in the human genome

answered Nov 15, 2017 at 12:23

10 votes

Accepted

How do I rename fasta headers?

answered Jun 21, 2018 at 12:09

9 votes

Why does cutadapt remove low quality bases from the ends of reads only?

answered Feb 26, 2018 at 12:45

8 votes

Accepted

How can I colour boxes in Gviz AnnotationTrack in R?

answered Nov 15, 2017 at 10:02

8 votes

Filtering step for read counts data

answered Sep 1, 2017 at 12:25

7 votes

How to get a list of genes corresponding to the list of SNPs (rs ids)?

answered Sep 10, 2017 at 8:34

7 votes

Accepted

differential gene expression complex design no replicates

answered Jul 26, 2017 at 7:38

7 votes

Accepted

Read counts from BAM file

answered Dec 14, 2017 at 10:07

7 votes

Accepted

How to release an R package with several bed files?

answered Nov 3, 2017 at 8:33

6 votes

Accepted

Does the DNA or RNA of some ethnic groups map better than others' to the human reference genome sequence?

answered Mar 4, 2018 at 8:12

6 votes

plotting two heatmaps with the same order of genes

answered Jul 4, 2018 at 18:36

6 votes

How do you download stuff from NCBI fast?

answered Apr 24, 2019 at 8:36

5 votes

Accepted

Authoritative source on human cytogenetic regions?

answered Apr 25, 2019 at 9:24

5 votes

Can a data file in VCF format be converted into FASTA?

answered Feb 27, 2018 at 15:15

5 votes

A good tool for gene locus visualization

answered Mar 27, 2018 at 20:15

5 votes

Accepted

Subset data frame based on ID

answered Nov 30, 2018 at 13:07

4 votes

How to retrieve SNPs data of different humans?

answered Jan 19, 2018 at 10:18

4 votes

Convert FPKM to RPKM

answered Sep 24, 2019 at 15:53

4 votes

GOseq analysis with evidence code filter

answered Mar 29, 2018 at 9:22

4 votes

BioMart Ensembl id imperfect retrieval

answered May 4, 2018 at 19:27

4 votes

Accepted

Generating burrows-wheeler-transform and a suffix array of a DNA sequence with less memory

answered Feb 9, 2018 at 19:53

4 votes

Subset data frame by similar elements from rows and column between two data frames

answered Mar 22, 2018 at 13:13

4 votes

Accepted

How to quantile normalization on RNA seq counts

answered Jan 23, 2019 at 19:11

4 votes

What happens if a major bug is discovered in a bioinformatic package that has been used in published literature?

answered Nov 14, 2017 at 10:27

4 votes

Accepted

Download multiple SRA files

answered Oct 17, 2017 at 7:46

4 votes

Accepted

creating graph of distribution of blast hits on the query sequence

answered Jul 27, 2017 at 8:55

4 votes

Accepted

Software recommendations - DNA composition

answered Aug 10, 2017 at 9:58

3 votes

How do I generate a color-coded tanglegram?

answered Jun 28, 2017 at 12:40

3 votes

True bam file encoding and viewing as text

answered Sep 1, 2017 at 20:57

Stack Exchange Network

80 Answers

How do I generate a color-coded tanglegram?

Least present k-mers in the human genome

How do I rename fasta headers?

Why does cutadapt remove low quality bases from the ends of reads only?

How can I colour boxes in Gviz AnnotationTrack in R?

Filtering step for read counts data

How to get a list of genes corresponding to the list of SNPs (rs ids)?

differential gene expression complex design no replicates

Read counts from BAM file

How to release an R package with several bed files?

Does the DNA or RNA of some ethnic groups map better than others' to the human reference genome sequence?

plotting two heatmaps with the same order of genes

How do you download stuff from NCBI fast?

Authoritative source on human cytogenetic regions?

Can a data file in VCF format be converted into FASTA?

A good tool for gene locus visualization

Subset data frame based on ID

How to retrieve SNPs data of different humans?

Convert FPKM to RPKM

GOseq analysis with evidence code filter

BioMart Ensembl id imperfect retrieval

Generating burrows-wheeler-transform and a suffix array of a DNA sequence with less memory

Subset data frame by similar elements from rows and column between two data frames

How to quantile normalization on RNA seq counts

What happens if a major bug is discovered in a bioinformatic package that has been used in published literature?

Download multiple SRA files

creating graph of distribution of blast hits on the query sequence

Software recommendations - DNA composition

How do I generate a color-coded tanglegram?

True bam file encoding and viewing as text