Timeline for How to convert BAM file to bigWig in Python?
Current License: CC BY-SA 4.0
4 events
| when toggle format | what | by | license | comment | |
|---|---|---|---|---|---|
| May 10, 2020 at 18:59 | vote | accept | Phoenix Mu | ||
| May 10, 2020 at 18:51 | comment | added | Devon Ryan | The scale factor dictates how the coverage track is transformed before writing the results to a bigWig file. Among other things, this then handles RPKM and other normalizations. Please notes that you'll have to pass an argparse object into it, which I understand is a bit annoying (I had't considered external use of that function). | |
| May 10, 2020 at 14:01 | comment | added | Phoenix Mu | Thanks, I am wondering what this scale factor means. Is it possible to calculate a RPKM or CPM like bamCoverage? | |
| May 10, 2020 at 6:50 | history | answered | Devon Ryan | CC BY-SA 4.0 |