Timeline for Kallisto psudoaligner quant not giving me expected output
Current License: CC BY-SA 4.0
8 events
| when toggle format | what | by | license | comment | |
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| Feb 3, 2021 at 9:34 | answer | added | Devon Ryan | timeline score: 3 | |
| Feb 3, 2021 at 9:32 | comment | added | user3051 |
I probably should give a file of transcripts to the index step and not a chromosome file Not probably, you must. Kallisto strictly pseudoaligns against a transcriptome, that is its mode of operation.
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| Feb 3, 2021 at 1:05 | comment | added | Modoc Dogman | OK but I first will try to verify. | |
| Feb 3, 2021 at 1:04 | comment | added | Maximilian Press | That makes sense. I would suggest posting that as an answer to your own question and then accepting it, to help others. | |
| Feb 3, 2021 at 1:00 | comment | added | Modoc Dogman | Thanks I think I know what is going on. I probably should give a file of transcripts to the index step and not a chromosome file. This is why it is giving my only chromosome abundances. | |
| Feb 3, 2021 at 0:13 | history | edited | Maximilian Press | CC BY-SA 4.0 |
added monospace formatting to make it easier to read.
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| Feb 2, 2021 at 23:34 | review | First posts | |||
| Feb 3, 2021 at 7:49 | |||||
| Feb 2, 2021 at 23:32 | history | asked | Modoc Dogman | CC BY-SA 4.0 |