Timeline for what percentage of the human genome is MAPQ=0?
Current License: CC BY-SA 3.0
9 events
| when toggle format | what | by | license | comment | |
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| Jan 2 at 11:28 | answer | added | terdon♦ | timeline score: 1 | |
| Jul 20, 2017 at 14:51 | answer | added | JRodrigoF | timeline score: 5 | |
| Jul 20, 2017 at 12:56 | history | edited | Kamil S Jaron |
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| Jul 19, 2017 at 19:20 | answer | added | user172818 | timeline score: 6 | |
| Jul 19, 2017 at 15:02 | answer | added | Fabio Marroni | timeline score: 1 | |
| Jul 18, 2017 at 18:29 | comment | added | Bioathlete | You can start with the repeat masked regions of the genome. That would reduce the search space if you want to look at 300bp regions. What is the insert size of your 2x150 library? That will play a large role in the mappability of the pair. | |
| Jul 17, 2017 at 12:36 | comment | added | Konrad Rudolph | UCSC used to have downloadable mappability tracks. These don’t seem to exist any more; the best bet now is to generate them yourself, using GEM. | |
| Jul 17, 2017 at 12:27 | comment | added | Devon Ryan | Are you expecting someone to have these numbers handy or do you want to know how to figure this out? :) | |
| Jul 17, 2017 at 12:22 | history | asked | 719016 | CC BY-SA 3.0 |