Timeline for Minfi and estimateCellCounts Error: in p[trainingProbes, ]: subscript out of bounds
Current License: CC BY-SA 4.0
10 events
| when toggle format | what | by | license | comment | |
|---|---|---|---|---|---|
| Aug 21, 2023 at 13:30 | vote | accept | Indira | ||
| Aug 18, 2023 at 13:15 | answer | added | Lucas Salas | timeline score: 2 | |
| Jul 20, 2023 at 16:12 | history | edited | Ram RS | CC BY-SA 4.0 |
deleted 12 characters in body
|
| Jul 20, 2023 at 15:49 | history | edited | Indira | CC BY-SA 4.0 |
added 1762 characters in body
|
| Jul 18, 2023 at 18:40 | comment | added | Indira |
I added source("/path/to/Forked_Minfi/R/estimateCellCounts.R") before the estimateCellCounts but I get the following error after running the command Error in .isMatrixBackedOrStop(rgSet, "estimateCellCounts"): could not find function ".isMatrixBackedOrStop" Traceback: 1. estimateCellCounts(RGset_450k, compositeCellType = "Blood", processMethod = "auto", . probeSelect = "auto", cellTypes = c("Bcell", "CD4T", "CD8T", . "Eos", "Gran", "Mono", "Neu", "NK"), referencePlatform = "IlluminaHumanMethylation450k", . returnAll = TRUE, meanPlot = TRUE, verbose = TRUE)
|
|
| Jul 18, 2023 at 17:25 | comment | added | Indira | Seems that one person found that there was an issue with NAs ( support.bioconductor.org/p/9148370 ) I am not sure if this is the case for me but adding this here as a comment just in case someone else has this issue with the NAs. The pull request seems to not have been approved yet. | |
| Jul 18, 2023 at 15:17 | history | edited | Indira | CC BY-SA 4.0 |
Editing
|
| Jul 18, 2023 at 15:11 | history | edited | Indira | CC BY-SA 4.0 |
deleted 1 character in body
|
| Jul 18, 2023 at 14:53 | history | edited | Indira | CC BY-SA 4.0 |
deleted 42 characters in body
|
| Jul 18, 2023 at 14:21 | history | asked | Indira | CC BY-SA 4.0 |