Timeline for What is the fastest way to get the reverse complement of a DNA sequence in python?
Current License: CC BY-SA 3.0
9 events
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| Feb 22, 2018 at 0:51 | comment | added | Alex Reynolds | @Devon_Ryan: With this test bench, the "Cython implementation (v2)" on my Python 3 setup gave a 91.1% increase over baseline and "table" (translate) gave a 84.6% increase. I'm not sure how a Python 2 Cython setup compares. | |
| Feb 20, 2018 at 22:55 | history | edited | Alex Reynolds | CC BY-SA 3.0 |
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| Feb 20, 2018 at 19:08 | history | edited | Alex Reynolds | CC BY-SA 3.0 |
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| Feb 20, 2018 at 11:01 | history | edited | Alex Reynolds | CC BY-SA 3.0 |
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| Feb 20, 2018 at 10:48 | history | edited | Alex Reynolds | CC BY-SA 3.0 |
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| Feb 20, 2018 at 10:16 | comment | added | Devon Ryan |
Nice! Can you compare this to the .translate() version in my code? It'd be interesting to see how much Cython is able to speed things up in comparison given the general python overhead.
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| Feb 20, 2018 at 10:16 | comment | added | Chris_Rands | Nice, +1 for Cython | |
| Feb 20, 2018 at 10:13 | history | edited | Alex Reynolds | CC BY-SA 3.0 |
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| Feb 20, 2018 at 10:07 | history | answered | Alex Reynolds | CC BY-SA 3.0 |