Timeline for A tool or webserver for building PSSM matrix
Current License: CC BY-SA 3.0
19 events
| when toggle format | what | by | license | comment | |
|---|---|---|---|---|---|
| Aug 21, 2019 at 13:25 | history | edited | M__♦ |
edited tags
|
|
| Jul 31, 2018 at 13:54 | answer | added | Matt Bashton | timeline score: 1 | |
| Jul 31, 2018 at 5:30 | answer | added | Sidra Younas | timeline score: 1 | |
| Aug 8, 2017 at 8:24 | vote | accept | Sara | ||
| Aug 8, 2017 at 8:24 | |||||
| S Aug 2, 2017 at 15:43 | history | suggested | James Hawley | CC BY-SA 3.0 |
Expanding PSSM initialization since I've never seen it before.
|
| Aug 2, 2017 at 14:51 | review | Suggested edits | |||
| S Aug 2, 2017 at 15:43 | |||||
| Aug 1, 2017 at 21:19 | history | bumped | CommunityBot | This question has answers that may be good or bad; the system has marked it active so that they can be reviewed. | |
| Jul 2, 2017 at 21:04 | answer | added | Joe Healey | timeline score: 2 | |
| Jul 2, 2017 at 6:50 | comment | added | friveroll | I think you could use standalone blast, one example here biostars.org/p/15482 | |
| Jun 30, 2017 at 16:10 | comment | added | terdon♦ |
@Sara see formatting tools for help on formatting your posts. For things like this, you want to use code ({}) which uses a fixed-width font.
|
|
| Jun 30, 2017 at 16:09 | comment | added | terdon♦ | @Llopis it should be fine posted here as code. | |
| Jun 30, 2017 at 16:09 | history | edited | terdon♦ | CC BY-SA 3.0 |
added 392 characters in body
|
| Jun 30, 2017 at 15:14 | history | edited | Sara | CC BY-SA 3.0 |
added 5145 characters in body
|
| Jun 30, 2017 at 14:58 | comment | added | llrs | You can't but you can copy paste the content or add a link to dropbox or a similar server | |
| Jun 30, 2017 at 14:51 | comment | added | Sara | I do not exactly know how to post PSSM file here. Could you please guide me how to load a file here? | |
| Jun 30, 2017 at 14:34 | comment | added | llrs | So it seems that you need to provide the PSSM in certain format and CAPS didn't manage to create it in the expected format. Could you post the PSSM here (or in an accessible way) ? Now that I look in the help I couldn't find any reference to a specific format (just that it should be from their own output ...) | |
| Jun 30, 2017 at 14:25 | comment | added | Sara | The error was: Message ID#9 Error: PSSM processing error: Incomplete PSSM with Parameters provided on input: missing score matrix | |
| Jun 30, 2017 at 14:15 | comment | added | llrs | Which error did it give you the NCBI PSI-BLAST? Could you paste here the image with the options used? What have you tried to overcome this problem? | |
| Jun 30, 2017 at 13:19 | history | asked | Sara | CC BY-SA 3.0 |