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I have downloaded a dataset from GEO and only the matrix (mx) files are available. How can I perform the analysis without the barcode and the gene features?

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  • $\begingroup$ what do you mean by gene features? Does the matrix have genes as rownames? Can you share the GEO number? you need gene names or metadata ... $\endgroup$ – StupidWolf Jun 29 '20 at 15:08
  • $\begingroup$ Seurat has different functions that can read different types of data. Please share a few rows and columns of your data and we can try to point you to the right direction (function). $\endgroup$ – haci Jul 2 '20 at 11:06

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