Questions tagged [gmap]

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Transferring genomic features on new coordinates

I have a eukaryotic genome for which an updated sequence for a chromosome was recently obtained. I want to map RNAseq reads on the genome (and perform other downstream analyses) and would like to use ...
6
votes
1answer
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STAR-long parameters for aligning RNA ONT reads to genome

Are there any suggested parameters to align ONT reads to the reference genome using STAR-long? For now, I used the parameters suggested here, but I noticed a weird behaviour. I have RNA reads (D. ...