All Questions
Tagged with microbiome microbial-genomics
3 questions
1
vote
1
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24
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Interpretation of MVABUND results
I ran multivariate analysis using the mvabund package on R to see which factors were significant in influencing gut microbiota. When I was running it for just the factor "Line", my results ...
- 13
2
votes
1
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Model optimization causes overfitting
I'm working on an ML model to predict colorectal cancer using data from the human microbiome (collected from fecal samples).
My dataset is made up of metadata (containing phenotypic information on the ...
- 37
0
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1
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41
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Try to understand better how to set out an effective sample size within the MetagenomSeq package in microbiome
Cross-posted on biostars: https://www.biostars.org/p/9572744/
I am trying to understand better what number to be used and how to put it in the function MRcoefs within the Metagenomeseq package in R ...