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Please supplement your question with a minimal reproducible example. Use dput() for data and specify all non-base packages with library calls. For statistical questions please use http://stats.stackexchange.com.
0
votes
0
answers
126
views
Linking UK biobank patient IDs with their corresponding genetic data
I am analyzing ukbb data and I have patient IDs for both cases and controls. Now I want the genetic data of all patients based on their IDs.
I am trying to test with chromosome 5 as I have both bgen a …
2
votes
0
answers
93
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Mapping ICD9 codes in UKBB data to PheCodes using PheWAS package
I am using CreatePhewasTable function in R for the conversion. … I am sharing my R script
library(data.table)
library(dplyr)
library(PheWAS)
icdt <- fread("icd_codes.tab",header=T,sep="\t")
icdt <- as.data.frame(icdt)
for (i in 215:261) {
icd9 <- data.frame(matrix …