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Single Nucleotide Polymorphisms. How to find them? How to correlate them with other data? How to represent them? What is their distribution?
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What tool I can use to map short-reads sequences to reference genome and get specific mapped...
Actual scenario:
The SNP sequences are from a SNP panel data (90bp sequence, SNP is at the middle). … We would like to extend the sequence to 300bp, retaining the SNP at the middle so we can make a sequence capture panel of the SNP. …