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Benchmarking problems relate to problems where efficiency is key, beyond just solving a problem itself. What's the fastest or most efficient way to solve a problem?

2 votes
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Converting Plink .bed files to .bcf *with* an AC (allele count) field?

I have some extremely large (N ~ 400,000) Plink .bed files that I want to phase using shapeit5. Shapeit5 requires input data be in .bcf or .vcf format, and that it have an "AC" (allele count) field. H …